Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001971-TA|BGIBMGA001971-PA|undefined
         (55 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              19   4.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   4.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    18   8.4  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 21  ASQPALSGV--PAVEMQAKHSVLWHLLIDLPIVLLG 54
           AS P L+ +  P+  ++   S +W  L    ++L+G
Sbjct: 406 ASGPGLAFLVYPSAVLELPGSSIWSCLFFFMLILIG 441


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)

Query: 7   FINVALRSMAQVETASQPALSGVPAV---EMQAKH--SVLWHL 44
           FI+V      +++  +Q A  G PAV   E Q +    +LW++
Sbjct: 770 FISVQAPPHFEIKLKNQTARRGEPAVLQCEAQGEKPIGILWNM 812


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.0 bits (37), Expect = 4.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 32  VEMQAKHSVLWHLLIDL 48
           +E   KH +L  L+IDL
Sbjct: 357 LEKVIKHDILRMLIIDL 373


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.2 bits (35), Expect = 8.4
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 30  PAVEMQAKHSVLWHLLIDLPIVLLG 54
           P+  ++   S +W  L    ++L+G
Sbjct: 364 PSAVLELPGSSIWSCLFFFMLILIG 388


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,196
Number of Sequences: 429
Number of extensions: 267
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 55
length of database: 140,377
effective HSP length: 35
effective length of query: 20
effective length of database: 125,362
effective search space:  2507240
effective search space used:  2507240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)