GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001971-TA|BGIBMGA001971-PA|undefined
         (55 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0261 - 21919017-21920594                                         26   3.2  
07_03_0771 - 21381276-21381461,21381583-21381733,21381823-213820...    26   3.2  

>09_06_0261 - 21919017-21920594
          Length = 525

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)

Query: 4   NNKFINVALRSMAQVETASQPALS---GVPAVEM 34
           N K + VALR M  +E +   A++   GVPA EM
Sbjct: 376 NLKSLRVALRDMESLERSELEAMASAAGVPATEM 409


>07_03_0771 -
           21381276-21381461,21381583-21381733,21381823-21382060,
           21382161-21382368,21382650-21382777,21382892-21383029,
           21383160-21384012
          Length = 633

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 21  ASQPALSGVPAVEMQAKHSVLWHLLIDLPIV 51
           AS PA   VPA  +  K+S    LLI LPIV
Sbjct: 271 ASAPAPDVVPATTLVKKNSASKILLIVLPIV 301


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.131    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,313,313
Number of Sequences: 37544
Number of extensions: 30555
Number of successful extensions: 71
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 2
length of query: 55
length of database: 14,793,348
effective HSP length: 36
effective length of query: 19
effective length of database: 13,441,764
effective search space: 255393516
effective search space used: 255393516
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)