GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001970-TA|BGIBMGA001970-PA|undefined
         (184 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0130 - 20408835-20411771                                         29   3.0  
10_01_0102 - 1244294-1245478                                           28   3.9  
02_02_0032 - 6227556-6227926,6228322-6231085                           28   3.9  
06_03_0602 - 22666227-22668740                                         28   5.2  

>11_06_0130 - 20408835-20411771
          Length = 978

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 28  IGTRLNLFQLALSRKNLASHVKVSLGSIG--TPLPITSERFIGKTIERVWKLTDAFMYTL 85
           +G   +L +LALS   L+  +  SLG +   + L ++S    G   + +W ++   ++ +
Sbjct: 273 LGNLNSLLELALSDNTLSGAIPSSLGRLSRLSSLHLSSNNLSGLIPDPIWNISSLTVFGV 332

Query: 86  KY 87
           +Y
Sbjct: 333 QY 334


>10_01_0102 - 1244294-1245478
          Length = 394

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 23  RATEKIGTRLNLFQLALSRKNLASHVKVSLGSI 55
           R  ++IG   +L  L+LS  NL  H+  SLG++
Sbjct: 114 RIPDEIGELRSLTTLSLSFNNLTGHIPASLGNL 146


>02_02_0032 - 6227556-6227926,6228322-6231085
          Length = 1044

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 28  IGTRLNLFQLALSRKNLASHVKVSLGSIG--TPLPITSERFIGKTIERV--WKLTDAFMY 83
           IG   NL  L+ ++ NL+ H+  S+GS+   T   I      G     +  W+  +    
Sbjct: 534 IGNLSNLLVLSFAQNNLSGHIPDSIGSLSQLTEFYIDGNNLNGSIPANIGQWRQLEKLDL 593

Query: 84  TLKYLGGS 91
           +  + GGS
Sbjct: 594 SHNFFGGS 601


>06_03_0602 - 22666227-22668740
          Length = 837

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 26  EKIGTRLNLFQLALSRKNLASHVKVSLGS 54
           E +GT  NL  L LS  NL+ ++  SLGS
Sbjct: 200 EGLGTLSNLSVLYLSNNNLSGNIPFSLGS 228


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,706,372
Number of Sequences: 37544
Number of extensions: 175865
Number of successful extensions: 485
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 480
Number of HSP's gapped (non-prelim): 6
length of query: 184
length of database: 14,793,348
effective HSP length: 78
effective length of query: 106
effective length of database: 11,864,916
effective search space: 1257681096
effective search space used: 1257681096
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)