GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001970-TA|BGIBMGA001970-PA|undefined
         (184 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           32   0.33 
SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)                     28   4.0  

>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 31.9 bits (69), Expect = 0.33
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 28   IGTRLNLFQLALSRKNLASHVKVSLGSIGTPLPITSER 65
            + T  ++F    +++N+ASHV   LG   +P P TS+R
Sbjct: 1253 VDTSTSVFDRISTKENVASHVSRPLGGSTSPSPFTSKR 1290


>SB_10773| Best HMM Match : TatC (HMM E-Value=0.31)
          Length = 380

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 4/71 (5%)

Query: 112 YPIPQATVSVFFRIEDKHIEPL--EIRGVPRMWFRIEGQQVDHDVQFVALTADWILAVLQ 169
           YP+     +V+FR   +HIE +  +IR   R W  I  + + H +  V  T  + +A+  
Sbjct: 178 YPLFYLVGTVYFR--KRHIERVLGQIRLTRRYWNHIRNKLLKHCIYIVLFTVVFPVALRA 235

Query: 170 MKMKLFQRIEK 180
            +M +    EK
Sbjct: 236 CEMNIPTMTEK 246


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,389,525
Number of Sequences: 59808
Number of extensions: 194317
Number of successful extensions: 422
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 2
length of query: 184
length of database: 16,821,457
effective HSP length: 78
effective length of query: 106
effective length of database: 12,156,433
effective search space: 1288581898
effective search space used: 1288581898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)