GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001970-TA|BGIBMGA001970-PA|undefined
         (184 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U55208-1|AAC50927.1| 2175|Homo sapiens myosin VIIa protein.            31   1.8  
U39226-1|AAB03679.1| 2215|Homo sapiens myosin VIIA protein.            31   1.8  
AB209629-1|BAD92866.1|  843|Homo sapiens myosin VIIA variant pro...    31   1.8  

>U55208-1|AAC50927.1| 2175|Homo sapiens myosin VIIa protein.
          Length = 2175

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 80   AFMYTLKYLGG--SQDECSQFYYFEAIFSQPCTAYPIP-QATVSVFFRIEDKHIEPLEIR 136
            AF+  LKY+G   S+   S     + IF  P  A P+  +A V +  ++ D HI   E R
Sbjct: 1735 AFIAVLKYMGDYPSKRTRSVNELTDQIFEGPLKAEPLKDEAYVQILKQLTDNHIRYSEER 1794

Query: 137  GVPRMW 142
            G   +W
Sbjct: 1795 GWELLW 1800


>U39226-1|AAB03679.1| 2215|Homo sapiens myosin VIIA protein.
          Length = 2215

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 80   AFMYTLKYLGG--SQDECSQFYYFEAIFSQPCTAYPIP-QATVSVFFRIEDKHIEPLEIR 136
            AF+  LKY+G   S+   S     + IF  P  A P+  +A V +  ++ D HI   E R
Sbjct: 1773 AFIAVLKYMGDYPSKRTRSVNELTDQIFEGPLKAEPLKDEAYVQILKQLTDNHIRYSEER 1832

Query: 137  GVPRMW 142
            G   +W
Sbjct: 1833 GWELLW 1838


>AB209629-1|BAD92866.1|  843|Homo sapiens myosin VIIA variant
           protein.
          Length = 843

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 80  AFMYTLKYLGG--SQDECSQFYYFEAIFSQPCTAYPIP-QATVSVFFRIEDKHIEPLEIR 136
           AF+  LKY+G   S+   S     + IF  P  A P+  +A V +  ++ D HI   E R
Sbjct: 388 AFIAVLKYMGDYPSKRTRSVNELTDQIFEGPLKAEPLKDEAYVQILKQLTDNHIRYSEER 447

Query: 137 GVPRMW 142
           G   +W
Sbjct: 448 GWELLW 453


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.325    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,342,006
Number of Sequences: 224733
Number of extensions: 942307
Number of successful extensions: 1704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1704
Number of HSP's gapped (non-prelim): 3
length of query: 184
length of database: 73,234,838
effective HSP length: 86
effective length of query: 98
effective length of database: 53,907,800
effective search space: 5282964400
effective search space used: 5282964400
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 62 (29.1 bits)