GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001970-TA|BGIBMGA001970-PA|undefined
         (184 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40959-1|AAA81765.1|  228|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z48583-3|CAA88471.2|  595|Caenorhabditis elegans Hypothetical pr...    29   1.5  

>U40959-1|AAA81765.1|  228|Caenorhabditis elegans Hypothetical
           protein B0310.1 protein.
          Length = 228

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)

Query: 44  LASHVKVSLGSIGTPLPITSERFIGKTIERVWKLTDAFMYTLKYL 88
           L   + V    IGTPL +T    +GK +  VW+ T  ++ T+ Y+
Sbjct: 104 LGKLIAVLYALIGTPLFLTVIGQLGKMVTSVWQGTTLWIVTIVYI 148


>Z48583-3|CAA88471.2|  595|Caenorhabditis elegans Hypothetical
           protein F54B3.3 protein.
          Length = 595

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 1   MNLPEIKAYEEQAIDTVVSVINRATEKIGTRLNLF 35
           +NL ++K +EE+   TV+  I  + E IG+ LN F
Sbjct: 203 VNLEQMKLHEEENRKTVIEKIKTSGELIGSGLNQF 237


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,141,382
Number of Sequences: 27539
Number of extensions: 160287
Number of successful extensions: 439
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 2
length of query: 184
length of database: 12,573,161
effective HSP length: 77
effective length of query: 107
effective length of database: 10,452,658
effective search space: 1118434406
effective search space used: 1118434406
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)