GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001970-TA|BGIBMGA001970-PA|undefined
         (184 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR ...    33   0.087
At3g28890.1 68416.m03606 leucine-rich repeat family protein cont...    33   0.12 
At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel...    29   1.9  
At2g32680.1 68415.m03995 disease resistance family protein conta...    29   2.5  
At4g14190.1 68417.m02190 pentatricopeptide (PPR) repeat-containi...    28   4.3  
At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /...    27   7.6  

>At5g05400.1 68418.m00582 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 874

 Score = 33.5 bits (73), Expect = 0.087
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 114 IPQATVSV--FFRIEDKHIEPLEIRGVPRMWFRIEGQQVDHDVQFVAL 159
           +P AT+S   F  I+D HI  +EI G       I G +V  D+ F+ L
Sbjct: 690 VPLATISSSRFLEIQDSHIPKIEIEGSSSNESEIVGPRVRRDISFINL 737


>At3g28890.1 68416.m03606 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Hcr2-0B
           [Lycopersicon esculentum] gi|3894387|gb|AAC78593
          Length = 711

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 17  VVSVINRATEKIGTRLNLFQLALSRKNLASHVKVSLGSIG--TPLPITSERFIGKTIERV 74
           V + + +    IG   NL  L L + N +  +   +G++   T L ++S  F G+    +
Sbjct: 226 VNNFLGQIPSSIGNLSNLTSLYLCKNNFSGQIPSFIGNLSQLTRLDLSSNNFFGEIPGWL 285

Query: 75  WKLTDAFMYTLKY 87
           W L + F   L Y
Sbjct: 286 WTLPNLFYVNLSY 298


>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
           (CNGC10) (ACBK1) almost identical to CaM-regulated
           potassium ion channel (ACBK1) GI:8515883 from
           [Arabidopsis thaliana]; contains Pfam domain, PF00520:
           Ion transport protein
          Length = 706

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 17/88 (19%), Positives = 39/88 (44%), Gaps = 1/88 (1%)

Query: 91  SQDECSQFYYFEAIFSQPCTAYPIPQATVSVFFRIEDKHIEPLEIRGVPRMWFRIEGQQV 150
           + D C +     A+  Q  + +PI   TV     +E   +   +++ V   + R+  +Q+
Sbjct: 533 ASDFCGEDLLPWALDPQSSSHFPISTRTVQALTEVEAFALTAEDLKSVASQFRRLHSKQL 592

Query: 151 DHDVQFVALT-ADWILAVLQMKMKLFQR 177
            H  +F ++    W ++ +Q   + + R
Sbjct: 593 QHTFRFYSVQWRTWSVSFIQAAWRRYCR 620


>At2g32680.1 68415.m03995 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Cf-2.2 [Lycopersicon
           pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 890

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 34  LFQLALSRKNLASHVKVSLGSIGTPLPIT---SERFIGKTIERVWKLTDAFMYTLKYLGG 90
           L  LAL   NLA  V+VS  S  + L I    S  F G+ +E + KL +     L +L  
Sbjct: 293 LAHLALRENNLAGSVEVSNSSTSSRLEIMYLGSNHFEGQILEPISKLINLKHLDLSFLNT 352

Query: 91  S 91
           S
Sbjct: 353 S 353


>At4g14190.1 68417.m02190 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 355

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 6   IKAYEEQAID---TVVSVINRATEKIGTRLNLFQLALSRKNLASHVKVSLGSIGTPLPIT 62
           +K  EE  +    T  ++   A  K+G   ++ +L LS   +  HVK+ L ++G    ++
Sbjct: 219 VKEMEEARVPWNTTFANIALLAYSKMGDFTSI-ELLLSELRI-KHVKLDLVTVGIVFDLS 276

Query: 63  SERFIGKTIERVWK 76
             RF G  +   WK
Sbjct: 277 EARFDGTGVFMTWK 290


>At1g02460.1 68414.m00195 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase PG1 GI:5669846, PG2 GI:5669848 from
           (Glycine max); contains PF00295: Glycosyl hydrolases
           family 28 (polygalacturonases)
          Length = 491

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 103 AIFSQPCTAYPIPQATVSVFFRIEDKHIEPLEIRGVPRMWFRIEGQQVDHDVQFVALTA 161
           AI + PC + PI       FF   +  +E L+I+  P+  FR +G Q  H V+ + +TA
Sbjct: 214 AIVTGPCDS-PIALR----FFMSSNLRVEGLQIKNSPQFHFRFDGCQGVH-VESLHITA 266


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.138    0.410 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,876,474
Number of Sequences: 28952
Number of extensions: 146402
Number of successful extensions: 428
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 425
Number of HSP's gapped (non-prelim): 7
length of query: 184
length of database: 12,070,560
effective HSP length: 77
effective length of query: 107
effective length of database: 9,841,256
effective search space: 1053014392
effective search space used: 1053014392
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)