GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001969-TA|BGIBMGA001969-PA|IPR000884|Thrombospondin,
type I, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site, IPR001590|Peptidase M12B, ADAM/reprolysin
         (754 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      26   1.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      26   1.1  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       23   5.8  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 521 TARGKSSGPWRRAAEWVAASGCHYHCIAPGAGLR 554
           T R    GP R AA    +  C YH +APG  +R
Sbjct: 597 TWRRNFHGPHRLAAR---SRRCCYHAVAPGTDIR 627


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 521 TARGKSSGPWRRAAEWVAASGCHYHCIAPGAGLR 554
           T R    GP R AA    +  C YH +APG  +R
Sbjct: 489 TWRRNFHGPHRLAAR---SRRCCYHAVAPGTDIR 519


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 23.4 bits (48), Expect = 5.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 13 IHPLPERFHTDDTKAHIIIKRRMVDTNNHLEEN 45
          + PLP  F+    K H  I + ++  NN  + N
Sbjct: 28 VQPLPRHFNPPSDKLHHPIHQTVIYHNNPRDPN 60


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,754
Number of Sequences: 317
Number of extensions: 8330
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 3
length of query: 754
length of database: 114,650
effective HSP length: 62
effective length of query: 692
effective length of database: 94,996
effective search space: 65737232
effective search space used: 65737232
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)