Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001969-TA|BGIBMGA001969-PA|IPR000884|Thrombospondin,
type I, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site, IPR001590|Peptidase M12B, ADAM/reprolysin
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 29 1.8
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 28 4.2
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 28 4.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 28 4.2
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 28 4.2
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 28 4.2
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 9.6
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 27 9.6
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 273 VVAHEIGHNLGMRHD 287
VVAHEIGH LG+ HD
Sbjct: 226 VVAHEIGHILGLIHD 240
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 28.3 bits (60), Expect = 4.2
Identities = 32/160 (20%), Positives = 74/160 (46%), Gaps = 21/160 (13%)
Query: 32 KRRMVDTNNHLEE--NVSCVEKDKKNTTLVDQ---KLWTKHRRKRDIITENKPDNTRLKE 86
K +++ + LEE S + +++K T + + +LW KH +E D
Sbjct: 59 KEKLMKIRSELEELWEQSMMYEEQKELTQLGEMLDRLWDKHINSEGSKSETISDTA---- 114
Query: 87 FKLNLAHRNRTIGKFIEKLATQSIREKRAIQPAIFVETAVFVDRDLYKHMTLNFPKDTER 146
++ + T+ K +E+ + ++++ + + +T+ + K TL++P D +
Sbjct: 115 ----ISGNDDTMEKRLEQFSDDTLQDTLETEKNLNSKTS-----ESLKSPTLSYPFDLD- 164
Query: 147 ELVRFVLAMINAVQLLYHDPSLGRPVNFILKRLEILHEDP 186
L + + + + + Y D L +N +++LEI+ +DP
Sbjct: 165 SLDKRIFKLESKIG--YADEPLSELLNKCMEKLEIVEQDP 202
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 701 LDDLITALNLTHTPEAHITYYDSIPDNV---EVDFNNPIHISPEDTL 744
++ L+ N+ PE+H+ S+ + E+ + NPI++S +DT+
Sbjct: 131 IEKLLLHSNIKLVPESHLITERSMKTQIKWKEILYQNPINLSSQDTI 177
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 30 IIKRRMVDTNNHLEENVSCVEKDKKNTTLVDQKLWTKHRRKRDIITENKPDNTR 83
I + R ++N ++E + EK + ++++L K D+ +K DN R
Sbjct: 167 IYENRRAESNKIMDETIQKSEKIDELLQYIEERLRELEEEKNDLAVYHKKDNER 220
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 4.2
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 8/81 (9%)
Query: 22 TDDTKAHIIIKRRMVDTNNHLEENVSCVEKDKKNTTLVDQKLWTKHRRKRDIITE----N 77
T K +I KRR ++ + V ++K+K NT Q+ W+K+ +++DI E N
Sbjct: 129 TPKKKHSLIRKRRKSPLDSSSAQKV--LKKNKLNTLEQAQQNWSKYIKEQDIQDELRIAN 186
Query: 78 KPDNTRLKEF--KLNLAHRNR 96
K +EF K AH +
Sbjct: 187 KDGYVERQEFLAKTRAAHEEK 207
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 28.3 bits (60), Expect = 4.2
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 486 HAEQKFTCSSTVDSEFSLKPSDCEWEALQAAPTESTARGKSSGPWRRAAEWVAA 539
H +Q SS+ D F +KP++C + + P + S P A WV++
Sbjct: 600 HPQQALKSSSSNDFYFLMKPNECIFTHVPENPDQQFIMPDLSMPIVMALPWVSS 653
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 50 EKDKKNTTLVDQKLWTKHRRKRDIITENKPDNTRLKEFKLNLAHRNRTIGKFIEKL 105
+K+K+++ + LW ++ I + N + TRLK + L R K IEKL
Sbjct: 222 QKEKRDSAQLVYLLWKLFHLEKSI-SSNMAEVTRLKADSIQLIERRDENTKEIEKL 276
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 222 HALILTGLDLYVVNKNGKDSSQVVGLAPVAGMCTV--TSSCTVNEGRHFESVY 272
H L L G+D + + + KD + V+ + P+A V TSS + +E ++
Sbjct: 109 HILALRGVDEWKIERFRKDGASVIVIDPIASSDIVYDTSSFSQEISARYEQMF 161
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.135 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,498,114
Number of Sequences: 5004
Number of extensions: 151812
Number of successful extensions: 314
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 309
Number of HSP's gapped (non-prelim): 10
length of query: 754
length of database: 2,362,478
effective HSP length: 78
effective length of query: 676
effective length of database: 1,972,166
effective search space: 1333184216
effective search space used: 1333184216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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