Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001969-TA|BGIBMGA001969-PA|IPR000884|Thrombospondin,
type I, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site, IPR001590|Peptidase M12B, ADAM/reprolysin
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073 35 0.21
04_04_0174 + 23305163-23305271,23305372-23305430,23305567-23305830 33 1.1
09_02_0283 + 6819086-6820270 31 3.4
01_06_1530 - 38019997-38020011,38020705-38020867,38021126-380212... 31 3.4
01_06_1105 - 34559694-34559852,34560298-34560312,34560451-345605... 31 4.5
09_04_0237 - 15936630-15937250,15937457-15937534,15938874-159389... 30 5.9
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 30 7.8
>03_05_0303 - 22939513-22939598,22940065-22940194,22940753-22941073
Length = 178
Score = 35.1 bits (77), Expect = 0.21
Identities = 31/82 (37%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 508 CEWEALQAAPTESTARGKSSGPWRRAAEWVAASGCHYHCI----APGAGLR-LVRAAASP 562
C A AA E+ RG S+ PWRR AAS ++H I AG R R S
Sbjct: 4 CLRRAAAAAVGEALRRGASTAPWRR-----AASASYHHTIQALPRETAGPRAAARERRSG 58
Query: 563 RTSIQLCAPAAAQPHRGCTRRK 584
R L A A A P G RK
Sbjct: 59 RVPAVLLALAGAGPGEGVAHRK 80
>04_04_0174 + 23305163-23305271,23305372-23305430,23305567-23305830
Length = 143
Score = 32.7 bits (71), Expect = 1.1
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 550 GAGLRLVRAAASPRTSIQLCAPAAAQPHRGCTRRKSPYQYATMVCSKYKERVRRLSGLGM 609
G G R RAAAS R+++++ A A A+ HR R M+ Y + RR S +
Sbjct: 78 GGGGRRRRAAASSRSTVEMRASAWAKHHRDEVARMH-----EMLKRDYASKARRRSPIN- 131
Query: 610 QISPALEDPDRP 621
P+LE+ D P
Sbjct: 132 NGEPSLEEEDLP 143
>09_02_0283 + 6819086-6820270
Length = 394
Score = 31.1 bits (67), Expect = 3.4
Identities = 17/61 (27%), Positives = 27/61 (44%)
Query: 552 GLRLVRAAASPRTSIQLCAPAAAQPHRGCTRRKSPYQYATMVCSKYKERVRRLSGLGMQI 611
G R + AA PR+ L P A G T P+ + ++ +RV LS G+ +
Sbjct: 58 GQRRLAAAYDPRSGAWLAVPTAPPARHGATSPPQPHSHVRLMRGASGDRVCALSLSGLAV 117
Query: 612 S 612
+
Sbjct: 118 A 118
>01_06_1530 -
38019997-38020011,38020705-38020867,38021126-38021211,
38021297-38022642,38022980-38023193
Length = 607
Score = 31.1 bits (67), Expect = 3.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 278 IGHNLGMRHDGPSADNG-CDPSAFLMSPTLGSGKI 311
+GH G R +G AD G DPS + PTL G +
Sbjct: 64 VGHGNGQRDEGIFADEGSSDPSFDSVEPTLSEGSV 98
>01_06_1105 -
34559694-34559852,34560298-34560312,34560451-34560522,
34560695-34561549
Length = 366
Score = 30.7 bits (66), Expect = 4.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 494 SSTVDSEFSLKPSDCEWEALQAAPTESTARGKSSGPWRRAAE 535
S T+ E S K D W+ +QAAP + G G RR E
Sbjct: 86 SITMPPELSKKTVDEVWKGIQAAPKRNAETGGGGGGGRRRRE 127
>09_04_0237 -
15936630-15937250,15937457-15937534,15938874-15938973,
15940414-15942278
Length = 887
Score = 30.3 bits (65), Expect = 5.9
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 512 ALQAAPTESTARGKSSGPWRRAAEWVAASGCHYHCIAPGAGLRLVRAAASPRTSIQLCAP 571
A +AAP ARG +G W RA +AA + G R AA+ R QL A
Sbjct: 191 AARAAPGTGHARGAGNGRWARAENLMAALQANPRPNVAQFGRIWTRIAAADR---QLTAA 247
Query: 572 AAA 574
AAA
Sbjct: 248 AAA 250
>07_03_1723 -
29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 29.9 bits (64), Expect = 7.8
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 489 QKFTCSSTVDSEFSLKPSDCEWEALQA-APTESTARGKSSGPWRRAAEWVAASGCHYHCI 547
++FT S+T + S++P E ++Q + K+S P +A E VA+S +
Sbjct: 463 KEFTPSATSSLDKSIRPDGAELSSVQPDRDLHGSTDMKNSSPVSKAKEIVASSPAPASFL 522
Query: 548 APGAGLR 554
AP + L+
Sbjct: 523 APASNLK 529
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,264,524
Number of Sequences: 37544
Number of extensions: 1047912
Number of successful extensions: 2195
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2190
Number of HSP's gapped (non-prelim): 9
length of query: 754
length of database: 14,793,348
effective HSP length: 88
effective length of query: 666
effective length of database: 11,489,476
effective search space: 7651991016
effective search space used: 7651991016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 64 (29.9 bits)
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