GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001969-TA|BGIBMGA001969-PA|IPR000884|Thrombospondin,
type I, IPR006025|Peptidase M, neutral zinc metallopeptidases,
zinc-binding site, IPR001590|Peptidase M12B, ADAM/reprolysin
         (754 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    25   3.0  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    25   3.0  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   4.0  

>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 329 QSRCLLDHGNSAGQLDHSAEGILPGE 354
           ++RC+ +HG +  Q+D   +G L  E
Sbjct: 42  KARCMSEHGTTQAQIDDVDKGNLVNE 67


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 329 QSRCLLDHGNSAGQLDHSAEGILPGE 354
           ++RC+ +HG +  Q+D   +G L  E
Sbjct: 42  KARCMSEHGTTQAQIDDVDKGNLVNE 67


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 12/34 (35%), Positives = 15/34 (44%)

Query: 295 CDPSAFLMSPTLGSGKITWSQCSKNYLQKFLDTV 328
           C+P   ++SPT       W Q  K  L   L TV
Sbjct: 272 CEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTV 305


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,997
Number of Sequences: 429
Number of extensions: 9744
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13
Number of HSP's gapped (non-prelim): 3
length of query: 754
length of database: 140,377
effective HSP length: 63
effective length of query: 691
effective length of database: 113,350
effective search space: 78324850
effective search space used: 78324850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)