GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001968-TA|BGIBMGA001968-PA|undefined
         (146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.17c |||mitochondrial ribosomal protein subunit L9 |Schiz...    28   0.50 
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   0.87 
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    26   2.7  
SPAC23H3.03c |||nitrogen permease regulator family|Schizosacchar...    25   6.1  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    24   8.1  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    24   8.1  

>SPCC777.17c |||mitochondrial ribosomal protein subunit L9
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 30 VKILKNKIAKIAMDGDVVKYLKTYCR 55
          VK+L N+++K+   GDVV   + Y R
Sbjct: 42 VKLLNNEVSKLGRQGDVVSVTRGYYR 67


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 11/56 (19%), Positives = 32/56 (57%)

Query: 1   MAARRVLRDVEDIFEHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKTYCRW 56
           ++  ++LR++ D  ++   ++  +FQ +   +L+++  +I + GD++K  +    W
Sbjct: 717 LSQEKILRELRDKLQNDHSSIFDAFQKMRNYMLQHQAIRIHVIGDILKLPQPISTW 772


>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 48  KYLKTYCRWQGEQKLKHENWWFSILFTGLDLFYFDDMGHAAKRV 91
           K  ++Y  W GE +   E W   +++ GL +       + +K +
Sbjct: 126 KIKESYLEWIGENQSHSEIWGPIVIYVGLFILLLSAFNYCSKLI 169


>SPAC23H3.03c |||nitrogen permease regulator
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 88  AKRVTSRSYMKGMCSINNSCTLTEWGNKN 116
           AK VT  +  K  CS+     + +W N+N
Sbjct: 295 AKNVTFATIFKLYCSLRQGLRVKDWMNEN 323


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)

Query: 32  ILKNKIAKIAMDGDVVKYLKTYCRWQGEQKLKHENWWFSILFTGLDLFYFDDMGHAAK 89
           ++  K+A +A  GDV K   T  R QG + +  E    + L   +D F    M  A K
Sbjct: 211 MIAGKVAVVAGFGDVGKGCSTSLRSQGARVIVTEVDPINALQAAMDGFEVTTMEEAVK 268


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 70  SILFTGLDLFYF-DDMGHAAKRVTSRSYMKGMCSINNS 106
           S+LF G+ L Y+ D+ G      ++ +Y+ G  ++N++
Sbjct: 485 SLLFPGIPLLYYGDEQGMYVLDNSANNYLYGRQAMNSA 522


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,239
Number of Sequences: 5004
Number of extensions: 27775
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 2,362,478
effective HSP length: 67
effective length of query: 79
effective length of database: 2,027,210
effective search space: 160149590
effective search space used: 160149590
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)