GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001968-TA|BGIBMGA001968-PA|undefined
         (146 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663     29   2.0  
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935...    28   3.4  
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399...    27   4.5  
10_08_0295 - 16581014-16583071                                         27   6.0  

>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
          Length = 741

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 52  TYCRWQGEQKLKHENWWFSI--LFTGLDLFYFDDMGHAAKRVTSRSYMKGMCSINNSCT 108
           T   W  ++ + H NWWF +     GL  + ++  G     V S  +  G   + +  T
Sbjct: 455 TITPWSADRHVHHPNWWFRVRLCLEGLPQYAWNRAGLEGVMVLSTFFPPGAGRVTSGIT 513


>11_04_0470 -
           18092681-18092695,18092725-18092811,18093528-18093593,
           18093696-18093740,18093850-18093903,18093987-18094082,
           18094161-18094241,18095634-18095714,18095798-18095884,
           18095976-18096074,18096644-18096769,18098162-18098248,
           18098321-18098389,18098711-18098806,18099053-18099169,
           18099710-18099790,18099873-18100010,18100307-18100580,
           18100735-18100830,18101612-18101757,18102883-18103141,
           18103434-18103537,18103623-18103748,18103872-18103982,
           18104200-18104304
          Length = 881

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 18/53 (33%), Positives = 24/53 (45%)

Query: 11  EDIFEHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKTYCRWQGEQKLK 63
           + + EH  L L I  QL + K  K         GD   +LK Y R+  + KLK
Sbjct: 548 QSVGEHKDLLLQIVGQLTNAKENKQFQPLTPDPGDFAPHLKPYARFYIQTKLK 600


>01_07_0111 -
           41137822-41138973,41139453-41139540,41139850-41139969,
           41140165-41140211,41140796-41141029,41141305-41141505,
           41141506-41143407,41144140-41145303,41145574-41145879
          Length = 1737

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 1   MAARRVLRDVEDIFEHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKTYC 54
           +A RR L  ++D++E    NL    Q+L      +KI     +G VV+ L T C
Sbjct: 267 LANRRYLIGLDDLWEEYGENLEKLKQMLQHGGKGSKIIVTTRNGSVVQVLHTGC 320


>10_08_0295 - 16581014-16583071
          Length = 685

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 52  TYCRWQGEQKLKHENWWFSI 71
           T   W  ++ + H NWWF +
Sbjct: 105 TITPWSADRHVHHPNWWFRV 124


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,143,193
Number of Sequences: 37544
Number of extensions: 156784
Number of successful extensions: 402
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 399
Number of HSP's gapped (non-prelim): 4
length of query: 146
length of database: 14,793,348
effective HSP length: 76
effective length of query: 70
effective length of database: 11,940,004
effective search space: 835800280
effective search space used: 835800280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)