GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001968-TA|BGIBMGA001968-PA|undefined
         (146 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)          42   3e-04
SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)            38   0.003
SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)              29   1.2  
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              29   2.0  
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_19968| Best HMM Match : TPR_2 (HMM E-Value=1.1e-39)                 27   6.2  
SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)                     27   6.2  

>SB_12784| Best HMM Match : ADAM_spacer1 (HMM E-Value=1.4e-23)
          Length = 571

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 28/119 (23%), Positives = 59/119 (49%), Gaps = 2/119 (1%)

Query: 10  VEDIFEHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKTYCRWQGEQKLKHENWWF 69
           V  I+   ++  +I+  L+ + IL+  + ++ +  +    L+++C+WQ +   K  +   
Sbjct: 29  VARIYRDKTIGNSINIVLVKIIILEIDLPELEITSNAASSLRSFCKWQTKMN-KPSDEEP 87

Query: 70  SILFTGLDLFYFDDMGHAAKRVT-SRSYMKGMCSINNSCTLTEWGNKNTAFMLAHEIAH 127
               T + L   D    A K  T   + +  +C+ + SC++ E    ++AF +AHE+AH
Sbjct: 88  GHFDTAILLTRTDICRAAGKCDTLGLAELGTVCNPSRSCSIVEVTGLSSAFTIAHELAH 146


>SB_13625| Best HMM Match : Reprolysin (HMM E-Value=2.3e-15)
          Length = 715

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 6   VLRDVEDIFEHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKTYCRW------QGE 59
           V+  V +I+   S+   I+  ++ + ILK  +  + +       ++++C W      + +
Sbjct: 222 VMNMVNNIYRDQSIGNAINIVVVRIIILKRDLPDLDIGHHAGNTIESFCAWASRVNPRSD 281

Query: 60  QKLKHENWWFSILFTGLDLFYFDDMGHAAKRVTSRSYMKGMCSINNSCTLTEWGNKNTAF 119
              KH +   ++L T  D+    D       +     + GMC+   SC + E    + A+
Sbjct: 282 THPKHHD--VAVLVTRKDICKGIDEPCGTLGLAQ---VNGMCTSTKSCNVNEDSGLSVAY 336

Query: 120 MLAHEIAH 127
            +AHEI H
Sbjct: 337 TIAHEIGH 344


>SB_4861| Best HMM Match : Exonuc_X-T (HMM E-Value=0.0063)
          Length = 773

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/34 (29%), Positives = 21/34 (61%)

Query: 56  WQGEQKLKHENWWFSILFTGLDLFYFDDMGHAAK 89
           W  +++++HE+    + FTG  +F F D+ H ++
Sbjct: 403 WSAQKQIEHESRAAMLYFTGSVVFIFSDLFHESR 436


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 15/57 (26%), Positives = 25/57 (43%)

Query: 86  HAAKRVTSRSYMKGMCSINNSCTLTEWGNKNTAFMLAHEIAHRSKRAWCLKPEENNK 142
           HA  R+ +R Y   + +   S  + E G   TA + +H      K   CL+  +N +
Sbjct: 169 HALSRMETRQYESSLANSERSSHIEEDGLSETASLASHVTEKNPKCVICLEGFKNGQ 225


>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1068

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/50 (22%), Positives = 25/50 (50%)

Query: 81  FDDMGHAAKRVTSRSYMKGMCSINNSCTLTEWGNKNTAFMLAHEIAHRSK 130
           F D+GH++ +V   +++KG   + ++      G ++  ++L    A   K
Sbjct: 257 FVDIGHSSLQVCITAFLKGQLKVLSTAVEPNLGGRDFDYVLVEHFAQEFK 306


>SB_19968| Best HMM Match : TPR_2 (HMM E-Value=1.1e-39)
          Length = 604

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 6   VLRDVEDIFEHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKTYCRWQGEQKLK 63
           V ++ +D FE  SL+L    +     +L  ++A++ +  D +   K   +W  E KLK
Sbjct: 522 VRQNRDDTFEDRSLDLDYDDESEQQHVL-TELARVTLGWDEITKGKWSAKWLNESKLK 578


>SB_11563| Best HMM Match : SNF7 (HMM E-Value=0.28)
          Length = 859

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 7/80 (8%)

Query: 44  GDVVKYLKTYCRWQGEQKLKHENWWFSILFTGLDLFYFDDMGHAAKRVTSRSYMKGMCSI 103
           GDV K L +YC  Q ++KLK        L + +D         A   V S S  +   + 
Sbjct: 543 GDVYKVLFSYCDEQADRKLKEYELEMERLRSKVDHL------QAQNNVISLSLEESRENA 596

Query: 104 NNSCTLT-EWGNKNTAFMLA 122
           +  C L  ++ + NTA  LA
Sbjct: 597 DKMCILMGKYESNNTALQLA 616


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,928,899
Number of Sequences: 59808
Number of extensions: 193479
Number of successful extensions: 517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 7
length of query: 146
length of database: 16,821,457
effective HSP length: 76
effective length of query: 70
effective length of database: 12,276,049
effective search space: 859323430
effective search space used: 859323430
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)