GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001968-TA|BGIBMGA001968-PA|undefined
         (146 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   1.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.9  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   6.9  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   9.2  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 73  FTGL-DLFYFDDMGHAAKRVTSRSYMKGMCSINNSCTLTEWGNKNTAFMLA 122
           +TG+ DLF FDD+     R+   +++      +    L   G  N    +A
Sbjct: 113 YTGISDLFVFDDLNDYINRLNYSAFVNLTAYYDGGANLNLNGTVNCTSSIA 163


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/13 (46%), Positives = 11/13 (84%)

Query: 35  NKIAKIAMDGDVV 47
           NK+ +I+ DGD++
Sbjct: 139 NKLLRISQDGDIL 151


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)

Query: 58  GEQKLKHENWWFSILFTGLDLFYFDDMGHAAKRVTSRSYMKGM 100
           G+Q ++ +   F      L  F  DD G  ++     SY+ G+
Sbjct: 250 GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGL 292


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 88  AKRVTSRSYMKGMCSINNSCTLTEWGNKNTAFMLAHEIAHRSKRAWCLKPEE 139
           A R+   +  KG+  +   CT+ E  + NT   LA   A R  +   + PE+
Sbjct: 82  AYRMIQDAEDKGL--LKPGCTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEK 131


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 9.2
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 20  NLTISFQLLDVKILKN 35
           N+T  ++LL+V  LKN
Sbjct: 102 NMTSEYRLLEVDWLKN 117


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,242
Number of Sequences: 429
Number of extensions: 1926
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 146
length of database: 140,377
effective HSP length: 52
effective length of query: 94
effective length of database: 118,069
effective search space: 11098486
effective search space used: 11098486
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)