GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001968-TA|BGIBMGA001968-PA|undefined
         (146 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38823.1 68415.m04770 expressed protein                             31   0.23 
At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   2.2  
At3g01320.1 68416.m00045 paired amphipathic helix repeat-contain...    28   2.2  
At5g13600.1 68418.m01574 phototropic-responsive NPH3 family prot...    27   3.8  

>At2g38823.1 68415.m04770 expressed protein
          Length = 258

 Score = 31.5 bits (68), Expect = 0.23
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 2   AARRVLRDVEDIFEHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKTYCRWQG--- 58
           AA  +L+DV +   H SL  ++    L++K LK  I ++  D +  +++K Y + +    
Sbjct: 149 AAHDLLKDVCNPTSHDSLRKSVE---LEIKALKKLIRELQKDWEEKQHVKQYTKNKYKDL 205

Query: 59  EQKLKH 64
           EQK+KH
Sbjct: 206 EQKVKH 211


>At5g20550.1 68418.m02440 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to leucoanthocyanidin dioxygenase
           [Malus domestica][SP|P51091], flavonol synthase [Petunia
           x hybrida][GI:311658]; contains PF03171 2OG-Fe(II)
           oxygenase superfamily domain
          Length = 349

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 30  VKILKNKIAKIAMDGDVVKYLKTYCRWQGEQKLKHENWWFSILFTGLDLFYFDD 83
           V+++ + I K  +D  + K  K +C    E+K K+     SI   G D+  +DD
Sbjct: 77  VQVINHGITKALLD-KIYKLTKEFCALPSEEKQKYAREIGSIQGYGNDMILWDD 129


>At3g01320.1 68416.m00045 paired amphipathic helix repeat-containing
            protein low similarity to transcription co-repressor Sin3
            [Xenopus laevis] GI:4960210; contains Pfam profile
            PF02671: Paired amphipathic helix repeat
          Length = 1378

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 5    RVLRDVEDIF--EHSSLNLTISFQLLDVKILKNKIAKIAMDGDVVKYLKT 52
            RVL   E+I+  E SSL   +S QL+D  I K +   ++MD     Y++T
Sbjct: 1238 RVLVHEENIYRLECSSLPSRLSIQLMDNIIEKPEAYAVSMDPTFASYMQT 1287


>At5g13600.1 68418.m01574 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000; contains
           BTB/POZ domain, Pfam:PF00651
          Length = 591

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 56  WQGEQ-KLKHENWWFSILFTGLDL 78
           W G Q K   ENWWF+ + + LDL
Sbjct: 197 WNGIQTKATSENWWFNDVSSFLDL 220


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,510,198
Number of Sequences: 28952
Number of extensions: 138804
Number of successful extensions: 329
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 329
Number of HSP's gapped (non-prelim): 4
length of query: 146
length of database: 12,070,560
effective HSP length: 75
effective length of query: 71
effective length of database: 9,899,160
effective search space: 702840360
effective search space used: 702840360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)