Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001964-TA|BGIBMGA001964-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002018|Carboxylesterase, type B
(1028 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 40 0.010
09_04_0409 + 17359459-17360622 39 0.018
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 39 0.018
09_04_0411 + 17366559-17367497 36 0.22
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284... 33 0.89
09_04_0410 + 17362751-17363698 33 1.6
08_02_1485 - 27466761-27467753 30 8.3
08_01_0632 - 5479118-5479555,5479701-5479866,5480452-5480565,548... 30 8.3
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 39.9 bits (89), Expect = 0.010
Identities = 38/157 (24%), Positives = 68/157 (43%), Gaps = 13/157 (8%)
Query: 528 FSSRMRNGEEFGISGSEDCLFINIFTPS-LKGSAPVVVFDYNDNFRTGFNGSLTYAPDFF 586
FSS++R +G ++++ P + PVV F + G+ +
Sbjct: 114 FSSQVRRSIVYGEQPRNR---LDLYIPKDINRPCPVVAFVTGGAWIIGYKAWGSLLGRRL 170
Query: 587 VEEGVVVVTISHRLGLLGYLTTEDDVIPGNNGLRDFLLGLQWIQDNIKSFGGDASRVSVM 646
E G++V I +R G T D++ D G+ ++ +NI S+GGD +R+ ++
Sbjct: 171 AERGIIVACIDYRNFPQG---TIGDMVS------DASQGISYVCNNIASYGGDPNRIYLV 221
Query: 647 GNRGGAAIAETLLYSKKAKGLFSAVMIQSGTTLEAMY 683
G GA IA L + K + S T ++A +
Sbjct: 222 GQSAGAHIAACALIEQAVKESSGQSISWSVTQIKAYF 258
Score = 32.7 bits (71), Expect = 1.6
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 181 VKDVILALKWIQSNINKFGGNPFKITLMGQDGGAAMVDILLHSPKAKGLFSGAILQSGTA 240
V D + ++ +NI +GG+P +I L+GQ GA + L K +I S T
Sbjct: 194 VSDASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIAACALIEQAVKESSGQSISWSVTQ 253
Query: 241 YSSMF 245
+ F
Sbjct: 254 IKAYF 258
>09_04_0409 + 17359459-17360622
Length = 387
Score = 39.1 bits (87), Expect = 0.018
Identities = 39/127 (30%), Positives = 55/127 (43%), Gaps = 18/127 (14%)
Query: 549 INIFTPSLKGSA---PVVVFDYNDNFRTGFNGSLTY---APDFFVEEGVVVVTISHRLGL 602
+ +F P L+ + PVVVF + F GS TY GV+VV++ +RL
Sbjct: 134 VRLFLPKLQEPSKKLPVVVFFHGGAFFIESAGSETYHNYVNSLAAAAGVLVVSVDYRLA- 192
Query: 603 LGYLTTEDDVIPGNNGLRDFLLGLQWI---QDNIKSFGGDASRVSVMGNRGGAAIAETLL 659
+ +P G D LQW QD + GD +R+ V G+ GA IA +L
Sbjct: 193 ------PEHPLPA--GYDDSWAALQWAASAQDGWIAEHGDTARLFVAGDSAGANIAHEML 244
Query: 660 YSKKAKG 666
A G
Sbjct: 245 VRAAASG 251
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 39.1 bits (87), Expect = 0.018
Identities = 33/114 (28%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 549 INIFTPSLK-GSAPVVVFDYNDNFRTGFNGSLTYAPDFFVEEGVVVVTISHRLGLLGYLT 607
++++ P+ + G PVV F + G+ G E G++V I +R G
Sbjct: 140 LDLYIPTDRTGLKPVVAFVTGGAWIIGYKGWGALLGRRLAERGILVACIDYRNFPQG--- 196
Query: 608 TEDDVIPGNNGLRDFLLGLQWIQDNIKSFGGDASRVSVMGNRGGAAIAE-TLLY 660
T D++ D G+ ++ +NI S+GGD R+ ++G GA IA TLL+
Sbjct: 197 TIGDMV------EDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIAACTLLH 244
Score = 31.9 bits (69), Expect = 2.7
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 181 VKDVILALKWIQSNINKFGGNPFKITLMGQDGGAAMVD-ILLH 222
V+D + ++ +NI +GG+P +I L+GQ GA + LLH
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIAACTLLH 244
>09_04_0411 + 17366559-17367497
Length = 312
Score = 35.5 bits (78), Expect = 0.22
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 21/132 (15%)
Query: 547 LFINIFTPSLKGSA-----PVVVFDYNDNFRTGFNGSLTY---APDFFVEEGVVVVTISH 598
LF+ +F P ++ PV+V+ + F S TY GV+VV++++
Sbjct: 55 LFVRVFLPKVQDQETGKKLPVLVYFHGGGFIIESADSATYHNYLNSVAAAAGVLVVSVNY 114
Query: 599 RLGLLGYLTTEDDVIPGNNGLRDFLLGLQWI---QDNIKSFGGDASRVSVMG-NRGGAAI 654
RL ++ +P G D LQW QD+ + GD RV V G + GG +
Sbjct: 115 RLA-------PENPLPA--GYDDSWAALQWAVSAQDDWIAEHGDTERVFVAGDSAGGNIV 165
Query: 655 AETLLYSKKAKG 666
E LL + KG
Sbjct: 166 HEMLLRASSNKG 177
>05_07_0228 -
28526885-28527046,28527151-28527241,28528315-28528455,
28528560-28528625,28529180-28529317,28529759-28529860,
28530156-28530236,28530314-28530383,28530598-28530674,
28531035-28531483
Length = 458
Score = 33.5 bits (73), Expect = 0.89
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 625 GLQWIQDNIKSFGGDASRVSVMGNRGGAAIAETLLYSKKAKGLFSAVMIQSGTTLEAMY 683
G+ ++ + + ++GGD +++ +MG GA IA L + AK + S T ++A +
Sbjct: 243 GISFVCETVGAYGGDPNQIYLMGQSAGAHIAACALLEQAAKESRGEQISWSVTQIKAYF 301
Score = 30.3 bits (65), Expect = 8.3
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 181 VKDVILALKWIQSNINKFGGNPFKITLMGQDGGAAMVDILLHSPKAK 227
V D + ++ + +GG+P +I LMGQ GA + L AK
Sbjct: 237 VSDASDGISFVCETVGAYGGDPNQIYLMGQSAGAHIAACALLEQAAK 283
>09_04_0410 + 17362751-17363698
Length = 315
Score = 32.7 bits (71), Expect = 1.6
Identities = 34/129 (26%), Positives = 53/129 (41%), Gaps = 18/129 (13%)
Query: 547 LFINIFTPSLKGSA---PVVVFDYNDNFRTGFNGSLTY---APDFFVEEGVVVVTISHRL 600
L + ++ P ++ + PV+VF + F S TY F GVVVV++ +RL
Sbjct: 58 LSVRLYLPKIQEPSKKLPVLVFFHGGGFLIESADSSTYHNYVNPFAAAAGVVVVSVDYRL 117
Query: 601 GLLGYLTTEDDVIPGNNGLRDFLLGLQWI---QDNIKSFGGDASRVSVMGNRGGAAIAET 657
+ +P D GL W QD + GD SR+ + G+ G I
Sbjct: 118 A-------PEHPLPA--AYDDSWAGLLWAASAQDGWLAEHGDVSRLFIAGDSAGGNIVHD 168
Query: 658 LLYSKKAKG 666
+L + G
Sbjct: 169 MLLRAASNG 177
>08_02_1485 - 27466761-27467753
Length = 330
Score = 30.3 bits (65), Expect = 8.3
Identities = 42/159 (26%), Positives = 58/159 (36%), Gaps = 13/159 (8%)
Query: 554 PSLKGSAPVVVFDYNDNFRTGFNGSLTYAPDFFVEEGVV---VVTISHRLGLLGYLTTE- 609
P PV+++ + F GS+ Y V VV++ +RL L
Sbjct: 73 PPPTSKLPVILYFHGGGFVLFSTGSVFYHASCEAMAAAVPAIVVSLDYRLAPEHRLPAAY 132
Query: 610 DDVIPGNNGLRDFLLGLQWIQDNIKSFGGDASRVSVMGNRGGAAIAETLLYSKKAKGLFS 669
DD LRD G WI + GD SR VMG+ G +A + +GL
Sbjct: 133 DDAASAVLWLRDAAAGDPWIAAH-----GDLSRCFVMGSSSGGNMALN-AGVRACRGLDL 186
Query: 670 AVMIQSGTTLEAMYF---YRTPKAKAFEFGRVLKIETDD 705
G L Y RTP + VL +E +D
Sbjct: 187 GPAAVRGLVLHQPYLGGVARTPSEEKSGDDAVLPLEAND 225
>08_01_0632 -
5479118-5479555,5479701-5479866,5480452-5480565,
5480713-5480849
Length = 284
Score = 30.3 bits (65), Expect = 8.3
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 7/116 (6%)
Query: 481 PIIKTYLKALAEEDSEEIKVLKSMPPVPHKGW---EGTYEAYVEKPTCLQFSSRMRNGEE 537
P+++ L LA + ++ ++ + + + G A + K + R+ E
Sbjct: 11 PLVRHLLSVLARPPAVDLPAMEFVKYYERRKYIEDSGVMRA-MAKVAVDRSDGRLEVFEG 69
Query: 538 FGISGSEDCLFINIFTPSLKGSAPVVVFDYNDNFRTGFNGSLTYAP---DFFVEEG 590
+G E +I +PSLKG + + +F Y D + F ++ P D VEEG
Sbjct: 70 YGFVNDELLQYIGDRSPSLKGLSLISLFSYLDISKKVFTEFISKCPCLEDLVVEEG 125
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.138 0.407
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,999,315
Number of Sequences: 37544
Number of extensions: 1323746
Number of successful extensions: 2469
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2462
Number of HSP's gapped (non-prelim): 11
length of query: 1028
length of database: 14,793,348
effective HSP length: 89
effective length of query: 939
effective length of database: 11,451,932
effective search space: 10753364148
effective search space used: 10753364148
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 65 (30.3 bits)
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