Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001963-TA|BGIBMGA001963-PA|IPR000886|Endoplasmic
reticulum targeting sequence, IPR002018|Carboxylesterase, type B
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1338 - 29440373-29440534,29440993-29441083,29441799-294419... 36 0.059
05_07_0305 - 29097478-29097598,29097766-29097866,29098136-290982... 33 0.41
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 31 1.7
08_02_0585 + 19014674-19014871,19014987-19015132,19016742-190168... 30 3.9
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 29 5.1
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 5.1
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597... 29 6.7
01_05_0724 - 24612712-24612852,24612985-24613038,24613340-246134... 29 6.7
01_06_1330 - 36361275-36361448,36361778-36361973,36362248-363623... 29 8.9
>06_03_1338 -
29440373-29440534,29440993-29441083,29441799-29441942,
29442094-29442159,29442589-29442729,29443077-29443178,
29443264-29443338,29443469-29443549,29443670-29443739,
29444063-29444139,29444392-29444660
Length = 425
Score = 35.9 bits (79), Expect = 0.059
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 7 LRDLVLGLEWINGNIEKFGGDRERITLMGSQGGA-AAVDLLMHSSAKK 53
+ D G+ ++ NI +GGD ERI L+G GA A L+H + K+
Sbjct: 202 VEDASQGIAFVCNNIASYGGDPERIYLVGQSAGAHIAACTLLHQAIKE 249
>05_07_0305 -
29097478-29097598,29097766-29097866,29098136-29098288,
29098404-29098542,29098649-29098719,29099022-29099333,
29099605-29099903,29100011-29100271,29100365-29100471,
29100588-29100739,29100816-29100970,29102946-29103141,
29103340-29103468,29103540-29103641,29103736-29103889,
29103970-29104058
Length = 846
Score = 33.1 bits (72), Expect = 0.41
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 91 SSGHKLIAKLNEVPPDNIVSKDFHACQKEFSKEYQRSIVTFGPVVEKQPDGLITEYPEDS 150
S H + ++ P +I +DFHA +K Y+ I T V+EK + +I YPE
Sbjct: 71 SKAHNFVERVKACP--DISREDFHALLNVLAKYYKNEIKTSEEVLEK-VERIIGNYPEFL 127
Query: 151 EQ 152
E+
Sbjct: 128 EE 129
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 9 DLVLGLEWINGNIEKFGGDRERITLMGSQGGA 40
D G+ ++ NI +GGD RI L+G GA
Sbjct: 196 DASQGISYVCNNIASYGGDPNRIYLVGQSAGA 227
>08_02_0585 +
19014674-19014871,19014987-19015132,19016742-19016844,
19017064-19017250,19017368-19017461,19017570-19017723,
19018076-19018192,19018276-19018296,19019096-19019209,
19019970-19020152,19021032-19021239,19021326-19021447,
19021559-19021656,19021875-19022052,19022130-19022244,
19022331-19022398,19022526-19022603,19023737-19023814,
19023897-19024082
Length = 815
Score = 29.9 bits (64), Expect = 3.9
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 265 DLFSDFNENKLNIMKMSSVEGVSWGAAGTDELCYLFKCPNLKETYLKHDNTMSE-DRKTQ 323
DLF D+ + K+ V + A + + +ET L +D +S K Q
Sbjct: 239 DLFKDYFATPYPLPKLDMVAIPDFAAGAMEN----YGLVTYRETALLYDELLSSASNKQQ 294
Query: 324 MKIVKLWSNFAKYRNPTPDNDETLAGLR 351
+ + + + F ++ N T DET +GLR
Sbjct: 295 VSYLAVEALFPEWNNWTQFLDETTSGLR 322
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 29.5 bits (63), Expect = 5.1
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 234 YTGDVLTAYSVNCAVSAYAKRSRSPIYYYHFDLFSDFNENKLNIMKMSSVEGVSWGA 290
Y DVL A S+ A+ + P L + ++N LN +K S V+G WGA
Sbjct: 746 YQWDVLAARSI----WAFGPEKQGPNILLDDTLSVEVDKNLLNAVKDSIVQGFQWGA 798
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.5 bits (63), Expect = 5.1
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 76 RERAFNLGEVMNRTASSGHKLIAKLNEVPPDNIVSK 111
R++ FNL E +NR S +LI ++ ++ ++ ++K
Sbjct: 448 RDKVFNLSEELNRVKISNQQLITQITKLTDESNIAK 483
>03_04_0169 -
17959262-17959304,17959441-17959532,17959682-17959759,
17959938-17960075,17960174-17960302,17960556-17960685,
17960797-17960974,17961177-17961315,17961399-17961488,
17961633-17961794,17961966-17962130,17962250-17962387,
17962827-17963006,17963405-17963533,17963878-17964113,
17964233-17964395,17965260-17965628,17965724-17965828
Length = 887
Score = 29.1 bits (62), Expect = 6.7
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 5 AGLRDLVLG-LEWINGNIEKFGGDRERITLMGSQGGAA 41
AGL D +L L W+ GN+ GD R L+ + GAA
Sbjct: 75 AGLWDEILAALTWVEGNMGAVLGDPRRPLLLSVRSGAA 112
>01_05_0724 -
24612712-24612852,24612985-24613038,24613340-24613429,
24613499-24613780,24613926-24614119,24614379-24614508,
24614610-24614690,24614766-24614891,24615019-24615076,
24615319-24615380,24615753-24615803,24615946-24616065,
24616280-24616403,24616832-24616920,24617304-24617396,
24617910-24618063,24618673-24619178
Length = 784
Score = 29.1 bits (62), Expect = 6.7
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 49 SSAKKLFSAVILQGGSSWSGAYLHDNVRERAFNLGEVMNRTASSGHKLIAKLNEVPPDNI 108
++A++ F V+ SW + D +R + + + L+ +LN+ P+++
Sbjct: 114 AAARRFFDWVVSGDWMSWWPFWRPDRRLQRLIDDADANPADPAKQSALLHELNKFSPEDV 173
Query: 109 VSK---DFHACQKEFSKEYQRSIVTFGPVVEKQPD 140
+ + HA EY R+++ + + PD
Sbjct: 174 IKRFEQRSHAVDSRGVAEYLRALILTNGIADYLPD 208
>01_06_1330 -
36361275-36361448,36361778-36361973,36362248-36362325,
36362685-36362807,36363206-36363463,36363914-36364073,
36364702-36364812,36365159-36365429,36365514-36365663,
36366383-36367090
Length = 742
Score = 28.7 bits (61), Expect = 8.9
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 341 PDNDETLAGLRWSPYTVENEEYLH-MDND-FKMKTELNKSKFKFWDDFI 387
P+N + L W +E + L ++ D K EL K++ KFWDD +
Sbjct: 479 PENGDGLTPFPWPARLMEPPKRLEGVEMDAHSSKKELFKAETKFWDDIV 527
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,996,027
Number of Sequences: 37544
Number of extensions: 579618
Number of successful extensions: 1165
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1160
Number of HSP's gapped (non-prelim): 11
length of query: 409
length of database: 14,793,348
effective HSP length: 84
effective length of query: 325
effective length of database: 11,639,652
effective search space: 3782886900
effective search space used: 3782886900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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