GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001962-TA|BGIBMGA001962-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region
         (1140 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.87 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   6.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   6.1  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    24   6.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.1 bits (57), Expect = 0.87
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 4/83 (4%)

Query: 675  EDDYEPEFVDSPTYLCDRPTPELPPRAGSSDRVLEPRDAPRGPSRAHSQGVFERRLP-KI 733
            +D  E E    P+    RP PE P R  + D  L P  + RG +   S  +     P  I
Sbjct: 1346 QDSSEDESYRGPSASGGRPVPERPERVPTVD--LSPSPSDRGRNDDGSDRLTSPPTPLSI 1403

Query: 734  YKFGLMDKSKRASSSALYERAPR 756
             + G  D+     S+ L +R+ R
Sbjct: 1404 SRAGSRDEDSTRDSTKL-DRSSR 1425


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 64  FWRMIWQERAAAIVMLTKTFDFIKVMCVQY 93
           +W++ W     AI +   TF+ IK + V+Y
Sbjct: 490 WWKICWTITTPAICVGVFTFNIIKFVPVKY 519


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 64  FWRMIWQERAAAIVMLTKTFDFIKVMCVQY 93
           +W++ W     AI +   TF+ IK + V+Y
Sbjct: 543 WWKICWTITTPAICVGVFTFNIIKFVPVKY 572


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 390 YPPFWPEGRH 399
           YPPFW E +H
Sbjct: 109 YPPFWDEDQH 118


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 324,036
Number of Sequences: 429
Number of extensions: 14577
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 6
length of query: 1140
length of database: 140,377
effective HSP length: 65
effective length of query: 1075
effective length of database: 112,492
effective search space: 120928900
effective search space used: 120928900
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)