Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001962-TA|BGIBMGA001962-PA|IPR000387|Tyrosine specific
protein phosphatase and dual specificity protein phosphatase,
IPR000242|Tyrosine specific protein phosphatase, IPR003595|Protein
tyrosine phosphatase, catalytic region
(1140 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1) i... 81 3e-15
At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1) i... 52 3e-06
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 36 0.12
At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar... 31 4.4
At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p... 31 4.4
At1g61040.1 68414.m06872 plus-3 domain-containing protein contai... 31 4.4
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 31 5.8
At4g17210.1 68417.m02588 myosin heavy chain-related contains wea... 31 5.8
At4g11100.1 68417.m01802 expressed protein 31 5.8
At4g02220.1 68417.m00300 zinc finger (MYND type) family protein ... 31 5.8
At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family... 31 5.8
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 31 5.8
At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein ... 30 7.7
At5g01280.1 68418.m00037 expressed protein 30 7.7
At3g01700.1 68416.m00103 arabinogalactan-protein (AGP11) identic... 30 7.7
At1g01880.1 68414.m00106 DNA repair protein, putative similar to... 30 7.7
>At1g71860.1 68414.m08305 protein tyrosine phosphatase 1 (PTP1)
identical to protein tyrosine phosphatase 1 GI:3170531
from [Arabidopsis thaliana]; contains Pfam profile:
PF00102 protein-tyrosine phosphatase
Length = 340
Score = 81.4 bits (192), Expect = 3e-15
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 11/202 (5%)
Query: 50 YIVTQGPTEDTVVDFWRMIWQERAAAIVMLTKTFDFIK-VMCVQYWPPNKEKDETYGDIS 108
+I TQGP T+ DFW M+ Q+ IVMLT+ D + V C Y+ +++ +G+IS
Sbjct: 134 FIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYF-QDEDGPREFGNIS 192
Query: 109 VGIVQEEELANFFIRTFRLYKTEKGVVIEERFILQFHYTQWHSHTCPFSNALLEFXXXXX 168
+ + + + + L K + +L Y +W H P +
Sbjct: 193 L-TTKWIKTTDTSLMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVR------ 245
Query: 169 XXXXXXXXXNPAAGPMVVHCNDGGGRSGVYLAIDANLE--LAEEEDSFDVFGCLKKLRES 226
P+ GP++VHC+ G GR+G Y AI ++ LA + + D+ + R+
Sbjct: 246 EILKRLYQVPPSLGPIIVHCSAGIGRTGTYCAIHNTIQRILAGDMSALDLAKTVALFRKQ 305
Query: 227 RKGLIENEEQYKFVYDTLEEHV 248
R G+++ +QY F Y+ + + +
Sbjct: 306 RIGMVQTMDQYFFCYNAIVDEL 327
Score = 65.7 bits (153), Expect = 2e-10
Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 18/246 (7%)
Query: 306 NREKNRDVLVVPPDNFRPYLTSFQGNSFTDYINAVFVDGYTKPR--EYIATEWPLMMTQG 363
N EKNR VVP D R L + +S Y+NA + ++IAT+ PL T
Sbjct: 87 NVEKNRYSDVVPFDKNRIVLNPCKDSSAKGYVNASLIKTSESESISQFIATQGPLPHTME 146
Query: 364 EFWSLVYDYECAAVVVL--CVPPKNSQQYPPFWPEGRHSKKYGPVFTIDHVSHNHYTNIK 421
+FW +V C +V+L V + + ++ + +++G + T++
Sbjct: 147 DFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYFQDEDGPREFGNISLTTKWIKTTDTSLM 206
Query: 422 TWIFRINKKIISLTELMAGVKAPTKTVQLFQLTCWPMGHKVPSSTNSLVELMNMVERWRQ 481
+N K TE P + + Q WP H VP T ++ E++ + ++
Sbjct: 207 LRNLEVNYK---ETE-----DQPMSVLHI-QYPEWP-DHGVPKDTVAVREILKRL--YQV 254
Query: 482 RTDYGPVCVVSPDGRSRAGVYCAANACIEQVIKHGEVDVFQAVKTVRRHRPQLVENMCEL 541
GP+ V G R G YCA + I++++ G++ KTV R Q + M +
Sbjct: 255 PPSLGPIIVHCSAGIGRTGTYCAIHNTIQRILA-GDMSALDLAKTVALFRKQRI-GMVQT 312
Query: 542 KDELWF 547
D+ +F
Sbjct: 313 MDQYFF 318
>At1g71860.2 68414.m08304 protein tyrosine phosphatase 1 (PTP1)
identical to protein tyrosine phosphatase 1 GI:3170531
from [Arabidopsis thaliana]; contains Pfam profile:
PF00102 protein-tyrosine phosphatase
Length = 277
Score = 51.6 bits (118), Expect = 3e-06
Identities = 36/140 (25%), Positives = 60/140 (42%), Gaps = 9/140 (6%)
Query: 50 YIVTQGPTEDTVVDFWRMIWQERAAAIVMLTKTFDFIK-VMCVQYWPPNKEKDETYGDIS 108
+I TQGP T+ DFW M+ Q+ IVMLT+ D + V C Y+ +++ +G+IS
Sbjct: 134 FIATQGPLPHTMEDFWEMVIQQHCPIIVMLTRLVDNNRTVKCGDYF-QDEDGPREFGNIS 192
Query: 109 VGIVQEEELANFFIRTFRLYKTEKGVVIEERFILQFHYTQWHSHTCPFSNALLEFXXXXX 168
+ + + + + L K + +L Y +W H P +
Sbjct: 193 L-TTKWIKTTDTSLMLRNLEVNYKETEDQPMSVLHIQYPEWPDHGVPKDTVAVR------ 245
Query: 169 XXXXXXXXXNPAAGPMVVHC 188
P+ GP++VHC
Sbjct: 246 EILKRLYQVPPSLGPIIVHC 265
Score = 45.2 bits (102), Expect = 3e-04
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 306 NREKNRDVLVVPPDNFRPYLTSFQGNSFTDYINAVFVDGYTKPR--EYIATEWPLMMTQG 363
N EKNR VVP D R L + +S Y+NA + ++IAT+ PL T
Sbjct: 87 NVEKNRYSDVVPFDKNRIVLNPCKDSSAKGYVNASLIKTSESESISQFIATQGPLPHTME 146
Query: 364 EFWSLVYDYECAAVVVL 380
+FW +V C +V+L
Sbjct: 147 DFWEMVIQQHCPIIVML 163
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 36.3 bits (80), Expect = 0.12
Identities = 33/104 (31%), Positives = 49/104 (47%), Gaps = 11/104 (10%)
Query: 708 LEPRDAPRGPSRAHSQGVFERRLPKIYKFGLMDKSKRASSSALYERAPRSPTEA---FYN 764
L+ + + R P +S+G P++ K M S SSS+ ++ PRS A YN
Sbjct: 746 LKRKTSQRSPEAINSRGQKNPPSPRVSKEPYMSSSLSVSSSSTRKKPPRSHEAANSRGYN 805
Query: 765 ATGSTRLSSQELFEKFCSEDFTSLYGREDDRRKRPPHSKSTGSS 808
T S R +S+E ++ +SL G RK+PP S SS
Sbjct: 806 HTPSLR-ASKEPYKS------SSLSG-SSSTRKKPPRSHEASSS 841
>At5g61140.1 68418.m07670 DEAD box RNA helicase, putative similar to
ASC-1 complex subunit P200 [Homo sapiens] GI:12061185;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF02889:
Sec63 domain
Length = 2146
Score = 31.1 bits (67), Expect = 4.4
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 728 RRLPKIYKFGLMDKSKRASSSALYERAPRSPTEAFYNATGSTRLSSQELFEKFCSEDFTS 787
++ P + L SKR SS AL R P+ EA++ G T S+ ELF + S
Sbjct: 2047 KKKPSTLEIRLEKTSKRNSSRALAPRFPKVKDEAWWLVLGDT--STSELF----AVKRVS 2100
Query: 788 LYGREDDRRKRPPHSKS 804
GR R + PP+ S
Sbjct: 2101 FTGRLITRMELPPNITS 2117
>At1g61210.1 68414.m06897 WD-40 repeat family protein / katanin p80
subunit, putative contains 5 WD-40 repeats (PF00400);
similar to katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 1180
Score = 31.1 bits (67), Expect = 4.4
Identities = 30/134 (22%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 970 SPRASRRTSQRSVDETLRQNSETRSWASDSVFTTPERRFPAASSPSSDGTHLSVTAQAE- 1028
S R +R + + L Q ++ +S T P+R P+A++ +SD + ++ T QA+
Sbjct: 784 SSRQTRTSPAPVMPMKLNQKTKIKSDEPPITSTRPDR--PSATNLTSDESPVTSTRQAKT 841
Query: 1029 SPRXXXXXXXXXXXXXXVVEEEPPSVIERTEYTLALKLGRIDLEDEPSERNSTPAGGSAR 1088
SP + +EPP + R T + ++ + L + + P S
Sbjct: 842 SPAPVTPVILNQRQTTNMKSDEPPVISTRPLRTSSARVMPVILNQASTTYDERPLSSSR- 900
Query: 1089 LSSRPSMHKLEPIE 1102
S+R S ++ P++
Sbjct: 901 -SARTSPARIMPMK 913
>At1g61040.1 68414.m06872 plus-3 domain-containing protein contains
Pfam profile PF03126: Plus-3 domain
Length = 643
Score = 31.1 bits (67), Expect = 4.4
Identities = 59/237 (24%), Positives = 88/237 (37%), Gaps = 24/237 (10%)
Query: 795 RRKRPPHSKSTGSSGSDVRHERTCCRRTPCSSQPALGRRHMCHAARSDRSTDSEDMSPHR 854
RR+ +S + S D +R R P SQ L +R A R DR+ E
Sbjct: 28 RRREGSYSDGSSDSRDDSDEDRGYASRKPSGSQVPLKKR--LEAEREDRAARVE------ 79
Query: 855 AGMRPLPLESDRDGQQSNCSRSAPLLSPDRFEARFTFDISE--RSEATSNRDETPSDATE 912
G P SDR+G S S L + + + ++E R S R + D
Sbjct: 80 GGYGDGP--SDREGDSSEESDFGDDLYKNEEDRQKLAGMTEFQREMILSERADKKGDKNF 137
Query: 913 TRNLTLYEEPHSDRTSLCELYDAAFSSQRPSFRRDGSRRHAGVVDLSALNFRAIDDESPR 972
T L E S E S S R R A L+ L + + + P
Sbjct: 138 TEKLRSKRESEKTPVSKKETQPLPASRGVRSSARSADRAAAKDDALNELRAKRMKQQDPA 197
Query: 973 ASRRTSQRSVDETLRQNSETRSWASDSVFTTPERRFPAASSPSSDGTHLSVTAQAES 1029
A R+ LR S+ S + D F++ +R+ P ASS S + ++++S
Sbjct: 198 ALRK---------LRDASKGGSGSRD--FSSTKRK-PLASSNLSSSSQSDSDSRSQS 242
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 30.7 bits (66), Expect = 5.8
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 668 PSTEAPDEDDYEPEF-VDSPTYLCDRPTP--ELPPRAGSSDRVLEPRDAPRGPSRAHSQ 723
P + APD P+ + + T L ++PTP + PP + SS +AP+ S + +
Sbjct: 821 PKSHAPDLSKIAPKSAIAARTALFEKPTPTSQEPPTSPSSSEATNQAEAPKSTSETNEE 879
>At4g17210.1 68417.m02588 myosin heavy chain-related contains weak
similarity to Swiss-Prot:P14105 myosin heavy chain,
nonmuscle (Cellular myosin heavy chain) (NMMHC) [Gallus
gallus]
Length = 527
Score = 30.7 bits (66), Expect = 5.8
Identities = 24/110 (21%), Positives = 46/110 (41%), Gaps = 4/110 (3%)
Query: 897 SEATSNRDETPSDATETRNLTLYEEPHSDRTSLCELYDAAFSSQRPSFRRDGSRRHAGV- 955
S ++S +T +D ++ L E DR +C A +Q S R+ A +
Sbjct: 56 SSSSSQSQDTTTDVSDKEMQLLLAEQEMDRVKICLDGSVAAKAQALSDLDSAQRKAADLR 115
Query: 956 VDLSALNFRAIDDESPRASRRTSQRSVDETLRQNSETRSWASDSVFTTPE 1005
V L ++ + +++ T + +++ +N ET S D + T E
Sbjct: 116 VKLESIKH---SRKCAISTKHTMNQRLEQLQSENQETESTREDYILITAE 162
>At4g11100.1 68417.m01802 expressed protein
Length = 287
Score = 30.7 bits (66), Expect = 5.8
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 969 ESPRASRRTSQRSVDETLRQ--NSETRSWASDSVFTTPERRFPAASSPSSDGTHLSVTAQ 1026
ES +S R+ R+ +E R NS T + AS FT P SPSS + S +
Sbjct: 201 ESNISSHRSGDRNQEEEGRNRGNSATENRASGETFTPVSANHPPPFSPSSSSSSSSSSDG 260
Query: 1027 AE 1028
AE
Sbjct: 261 AE 262
>At4g02220.1 68417.m00300 zinc finger (MYND type) family protein /
programmed cell death 2 C-terminal domain-containing
protein similar to SP|Q16342 Programmed cell death
protein 2 (Zinc finger protein Rp-8) {Homo sapiens};
contains Pfam profiles PF01753: MYND finger, PF04194:
Programmed cell death protein 2, C-terminal putative
domain
Length = 418
Score = 30.7 bits (66), Expect = 5.8
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 651 DEHEECDCARVSLERSGPSTEAPDEDDYEPE---FVDSPTYLCDRPTPELPPRAGSSDRV 707
D+ +E ++++ E DED YEP FV+SP + P AG
Sbjct: 23 DDDDETAVEPINMDEFDDDDEEDDED-YEPVMLGFVESPKFAWSNLRQLFPNLAGGVPAW 81
Query: 708 LEPRDAPRGPS 718
L+P + P G S
Sbjct: 82 LDPVNLPSGKS 92
>At2g22180.1 68415.m02634 hydroxyproline-rich glycoprotein family
protein
Length = 291
Score = 30.7 bits (66), Expect = 5.8
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 665 RSGPSTEAPDEDDYEPEFVDSPTYLCDRPTPELP 698
R PS APD DD +P D P + RPT LP
Sbjct: 5 RRPPSATAPDSDDDKP---DDPPSVWHRPTSSLP 35
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 30.7 bits (66), Expect = 5.8
Identities = 20/68 (29%), Positives = 27/68 (39%)
Query: 878 PLLSPDRFEARFTFDISERSEATSNRDETPSDATETRNLTLYEEPHSDRTSLCELYDAAF 937
P L+ FEA T D + E N D+ D T+ L P S L + D
Sbjct: 85 PSLAYTVFEAEKTMDNQQVVEGVINLDDDDDDDTDVEKKALCVVPSSSEIVLLDSDDEDN 144
Query: 938 SSQRPSFR 945
QRP ++
Sbjct: 145 ERQRPMYQ 152
>At5g66730.1 68418.m08412 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 500
Score = 30.3 bits (65), Expect = 7.7
Identities = 28/142 (19%), Positives = 56/142 (39%), Gaps = 5/142 (3%)
Query: 965 AIDDESPRASRRTSQRSVDETLRQNSETRSWASDSVFTTPERRFPAASSPS-SDGTHLSV 1023
A+ +ES + ++ + + R+N E + +V ++P P +S PS + ++
Sbjct: 187 ALAEESAKNHTQSKKLYPETVTRKNPEIEQKSPAAVESSPS--LPPSSPPSVAIAPAPAI 244
Query: 1024 TAQAESPRXXXXXXXXXXXXXXVVEEE--PPSVIERTEYTLALKLGRIDLEDEPSERNST 1081
+ + ES + E P +IE T+ + DL ++ S N
Sbjct: 245 SVETESVKIISSSVLPIQNSPESQENNNHPEVIIEEASRTIGFNVSSSDLSNDHSNNNGG 304
Query: 1082 PAGGSARLSSRPSMHKLEPIEP 1103
AG ++ PS++ P
Sbjct: 305 YAGLFVSSTASPSLYASSTASP 326
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 30.3 bits (65), Expect = 7.7
Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 9/238 (3%)
Query: 721 HSQGVFERRLPKIYKFGLMDKSKRASSSALYERAPRSPTEAFYNATGSTRLSS--QELFE 778
+S+ E + ++ + +R SSS+ R PT + T + R S+
Sbjct: 61 YSKEESEHQTTSLHSSSSVSGIRRPSSSSSSRSTSRPPTPTRKSKTPAKRPSTPTSRATS 120
Query: 779 KFCSEDFTSLYGREDDRR-KRPPHSKSTGSSGSDVRHERTCCRRTPCSSQPALGRRHMCH 837
TS R RP S TG+S + R R T + Q G
Sbjct: 121 TTTRATLTSSSTTSSTRSWSRPSSSSGTGTSRVTLTAARAT-RPTTSTDQQTTGSATSTR 179
Query: 838 AARSDRSTDSEDMSPHRAGMRPLPLESDRDGQQSNCSRSAPL--LSPDRFEARFTFDISE 895
+ ++R + + P P S +G S RS P LS + +
Sbjct: 180 S--NNRPMSAPNSKPGSRSSTPTRRPSTPNGS-STVLRSKPTKPLSKPALSLEASPIVRS 236
Query: 896 RSEATSNRDETPSDATETRNLTLYEEPHSDRTSLCELYDAAFSSQRPSFRRDGSRRHA 953
R +A TL + P + +S +DA+ SS+ S RD ++R +
Sbjct: 237 RPWEPYEMPGFSVEAPSNLRTTLPDRPQTASSSRTRAFDASSSSRSASTERDVAKRQS 294
>At3g01700.1 68416.m00103 arabinogalactan-protein (AGP11) identical to
gi|10880499|gb|AAG24279
Length = 136
Score = 30.3 bits (65), Expect = 7.7
Identities = 18/62 (29%), Positives = 26/62 (41%)
Query: 970 SPRASRRTSQRSVDETLRQNSETRSWASDSVFTTPERRFPAASSPSSDGTHLSVTAQAES 1029
+P+AS ++ E + A ++P P A PSSDG A AES
Sbjct: 50 APKASSPVAEEPTPEDDYSAASPSDSAEAPTVSSPPAPTPEADGPSSDGPSSDGPAAAES 109
Query: 1030 PR 1031
P+
Sbjct: 110 PK 111
>At1g01880.1 68414.m00106 DNA repair protein, putative similar to
Swiss-Prot:P28706 DNA repair protein rad13
[Schizosaccharomyces pombe]; similar to UV
hypersensitive protein [Arabidopsis thaliana]
gi|13649704|gb|AAK37472
Length = 570
Score = 30.3 bits (65), Expect = 7.7
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 794 DRRKRPPHSKSTGSSGSDVRHERTCCRRTPCSS---QPALGRRHMCHAARSDR 843
+ +KR PH G GS H ++ C C S + LG R C DR
Sbjct: 270 EMKKRSPHCSRCGHLGSKRTHFKSSCEHCGCDSGCIKKPLGFRCECSFCSKDR 322
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,324,071
Number of Sequences: 28952
Number of extensions: 1144378
Number of successful extensions: 2982
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2966
Number of HSP's gapped (non-prelim): 23
length of query: 1140
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1051
effective length of database: 9,493,832
effective search space: 9978017432
effective search space used: 9978017432
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)
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