GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001961-TA|BGIBMGA001961-PA|undefined
         (114 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   4.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    20   5.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   7.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   7.0  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 16  QRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQIVPLYL 75
           Q++H  + S     + K K   + T  + + VSI N+       S   S  +    P +L
Sbjct: 128 QKQHNQQQSVEKSSKLKNKSAPILTKTSPTPVSINNNTS----TSSSASSPSVTAAP-HL 182

Query: 76  QNLENVISPSI 86
           ++  N I P +
Sbjct: 183 RDSPNYIKPQL 193


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
          kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 48 SIPNSIKLTMLNSGLISF 65
          S+ NSI++  + S +ISF
Sbjct: 70 SLLNSIQIRCIESNMISF 87


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 30   EKKPKKKD 37
            EKKP+KKD
Sbjct: 1053 EKKPEKKD 1060


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 19.8 bits (39), Expect = 7.0
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 30   EKKPKKKD 37
            EKKP+KKD
Sbjct: 1053 EKKPEKKD 1060


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.130    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,873
Number of Sequences: 317
Number of extensions: 685
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 114,650
effective HSP length: 49
effective length of query: 65
effective length of database: 99,117
effective search space:  6442605
effective search space used:  6442605
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)