Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001961-TA|BGIBMGA001961-PA|undefined
(114 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 31 0.034
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 29 0.24
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 27 0.73
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 0.97
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 27 0.97
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 3.0
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 3.0
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 25 3.9
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 3.9
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 24 5.2
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 24 5.2
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 24 5.2
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 24 5.2
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 24 6.8
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 24 6.8
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 23 9.0
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 23 9.0
SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces pom... 23 9.0
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M... 23 9.0
SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr ... 23 9.0
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 31.5 bits (68), Expect = 0.034
Identities = 19/54 (35%), Positives = 26/54 (48%)
Query: 7 PRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNS 60
P G ++A S S SST K KKK SGT+ ++ +S K T +S
Sbjct: 359 PAGPAMAPSASNKPSASSTTKSSNSKSKKKVTSISGTSFFKNLASSTKPTSASS 412
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 28.7 bits (61), Expect = 0.24
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 14 TSQRKHRSKSSTR-YDMEKKPKKKDMRTSGTTSLVSIPN------SIKLTMLNSGLISFE 66
T Q K + + R Y+ + KK + TTSL ++P SI + + L++F
Sbjct: 174 TLQNKIQDELQRRSYETPQSSSKKKTNSKETTSLETLPTSIYFDCSISVRDCHDSLVTFN 233
Query: 67 TFQIVPLYLQNLENVISPSIGAVDSLVVRIRQC 99
+++PLY + N+ + ++ +S + ++ C
Sbjct: 234 --RVLPLYTISHSNLSTLTLVKPESKEISLQDC 264
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 27.1 bits (57), Expect = 0.73
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 46 LVSIPNSIKLTM--LNSGLISFETFQIVPLYLQNLENVISP 84
LV IKLT L+SG+IS + + + + LQ + NV+ P
Sbjct: 338 LVGASGHIKLTDFGLSSGIISKKKIESMKIRLQEVNNVVVP 378
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 0.97
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 14 TSQRKHRSKSSTRYD-MEKKPKKKDMRTSGTTSLVSIPNSIKL 55
+ HR S D +KK KK+D + S + S VS P+S KL
Sbjct: 609 SKHESHRESKSAEKDKKDKKDKKEDSKRSRSHS-VSKPDSSKL 650
Score = 23.4 bits (48), Expect = 9.0
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 2 SSRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKK 36
SS++G +G+S++ KH SK E +P+ K
Sbjct: 577 SSKSG-QGSSLSRRASKHESKHKRDSKHEARPESK 610
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 26.6 bits (56), Expect = 0.97
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 14 TSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQIVPL 73
+ + +RS +T ++ + S + VS N + + L + L+S ET Q VPL
Sbjct: 473 SEKTSNRSLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPL 532
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.0 bits (52), Expect = 3.0
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 26 RYDMEKKPKKKDMRTSGTTSLVS----IPNSIKLTMLNSGLISF 65
RY K KK+ TS +S VS IPNS+ ++ N + SF
Sbjct: 424 RYKNPVKNKKRSQLTSRISSSVSPSNVIPNSLTSSVSNFSVSSF 467
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.0 bits (52), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 42 GTTSLVSIPNSIKLTMLNSGLISFETFQIVPLYL 75
G+ SLVS SI +LN L F FQ V + +
Sbjct: 180 GSNSLVSTKKSIVTILLNEVLHPFYLFQAVSVLI 213
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 24.6 bits (51), Expect = 3.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 51 NSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIGAVDSLVV 94
+SI+ + NS ++ F +++Q + ++PSI V +L+V
Sbjct: 215 SSIRKRLGNSKTLAESLFSTAWVFVQKSDFFLTPSIDKVQALIV 258
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 24.6 bits (51), Expect = 3.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 2 SSRTGPRGTSVATSQRKHRSKSSTRYD---MEKKPKKKDMRTSGTTSLVSIPNSIKLTML 58
+S +G T +TSQ H S SST + +S ++S+ S N++++++L
Sbjct: 554 TSSSGSSHTITSTSQSVHTSGSSTSTSSVAVTSTAYSSSSSSSSSSSIESSANAVRVSIL 613
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 22 KSSTRYDMEKKPKKKDMRTSGTTSLVSIP 50
K + + +P+KK ++ T LVS+P
Sbjct: 138 KMKNSSESDNQPEKKKIKKQNPTDLVSVP 166
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 24.2 bits (50), Expect = 5.2
Identities = 12/60 (20%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 50 PNSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIGAVDSLVVRIRQCYKRRSLLRVR 109
PN K + + + +TF+ +P+ L NLE +S + + + + + + +++V+
Sbjct: 567 PNDAKKNQVTA--VRRDTFEKIPVPLNNLEKGVSDLLAKIQTNMYETAKAERDAHVVKVK 624
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 24.2 bits (50), Expect = 5.2
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 16 QRKHRSKSSTRYDMEKKPKKKDMRTSGTTS 45
+RK + R E K ++KD + G TS
Sbjct: 341 KRKKEQDENVRRKRENKKRRKDQKKEGITS 370
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 11 SVATSQRKHRSKSSTRYDMEKKPKK 35
S TSQR +S RY + PKK
Sbjct: 606 SSRTSQRFFKSDGKVRYPLSNTPKK 630
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 23.8 bits (49), Expect = 6.8
Identities = 20/104 (19%), Positives = 40/104 (38%), Gaps = 1/104 (0%)
Query: 2 SSRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSG 61
S+ P + T K+R S ++ TSGT S+ +S + + + G
Sbjct: 255 STPLSPEDVDLGTYTVKNRDSWSNEVNLSASTNNLSTNTSGTLKPYSLSSS-RSSSYSKG 313
Query: 62 LISFETFQIVPLYLQNLENVISPSIGAVDSLVVRIRQCYKRRSL 105
+ S + Q + + N + P + R R+ +R ++
Sbjct: 314 VNSAASLQSIWETMNNSNPSVIPESTSSREPAARYRKISERNAV 357
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 23.8 bits (49), Expect = 6.8
Identities = 13/63 (20%), Positives = 29/63 (46%)
Query: 4 RTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLI 63
R G GT+ ++R + ++ D + ++ S TS+ I N ++ ++ + +
Sbjct: 168 RRGSVGTTATHTKRSKNAPKTSPKDASNETADQEKELSLHTSIDEIQNPVRKSVAKAWVS 227
Query: 64 SFE 66
FE
Sbjct: 228 VFE 230
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 23.4 bits (48), Expect = 9.0
Identities = 18/64 (28%), Positives = 26/64 (40%)
Query: 10 TSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQ 69
+S +S+ S SS D EKK K +TS + + P I+ I+ E
Sbjct: 267 SSSPSSEDSDLSLSSDSDDDEKKQPSKSEKTSSMSVSIKPPKIIRKGSKEQNRIAKEKAS 326
Query: 70 IVPL 73
PL
Sbjct: 327 GAPL 330
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 325
Score = 23.4 bits (48), Expect = 9.0
Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 11 SVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGL--ISFETF 68
S+ S + K +R + PK+ ++R + ++ ++K + SGL + + F
Sbjct: 10 SIRMSHPYYSEKEISRILSTRDPKENNLRMQAFAWISTLSKTLKFPVRTSGLAMLLYSRF 69
Query: 69 QI 70
Q+
Sbjct: 70 QL 71
>SPAP8A3.11c |||mitochondrial GTPase Mtg2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 419
Score = 23.4 bits (48), Expect = 9.0
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 30 EKKPKKKDMRTSGTTSLVSIPNSIKLTMLN 59
E+K + +++T LV +PN+ K T+LN
Sbjct: 225 EQKLIELELKTICEIGLVGLPNAGKSTLLN 254
>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/71 (19%), Positives = 34/71 (47%)
Query: 16 QRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQIVPLYL 75
+++++ ++ T DM + D ++ G +LV I + GL+ + + L +
Sbjct: 11 EKRYKCRADTIPDMSEVLDPNDPQSFGFEALVEIKPRVFSFQKAPGLLILKNYVSSELQM 70
Query: 76 QNLENVISPSI 86
Q L++++ I
Sbjct: 71 QLLKSIMFTQI 81
>SPBC660.12c |||peptide epimerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 392
Score = 23.4 bits (48), Expect = 9.0
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 42 GTTSLVSIPNSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIGAVDSLVV 94
GT SL ++L F +P+Y++ N ++ IGA S +V
Sbjct: 30 GTESLAVYNKHVQLLKEAQSKPDFMCNAYMPMYMEATRNEVAKLIGADSSNIV 82
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.130 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 466,852
Number of Sequences: 5004
Number of extensions: 16713
Number of successful extensions: 87
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 22
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)
- SilkBase 1999-2023 -