Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001961-TA|BGIBMGA001961-PA|undefined
(114 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250... 29 1.2
05_03_0417 - 13690127-13690229,13690644-13690705,13691248-136913... 28 2.0
10_08_0825 + 20831170-20831349,20831380-20831547,20831627-208316... 27 3.6
03_01_0363 + 2827990-2828055,2828215-2829306,2829715-2829837,282... 27 3.6
02_05_0544 + 29876337-29876524,29876850-29876882,29878390-298785... 27 4.7
08_02_0830 - 21617485-21618198 26 6.2
08_01_0194 - 1603702-1603782,1603970-1604062,1604203-1604328,160... 26 8.2
07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423 26 8.2
06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,706... 26 8.2
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 26 8.2
02_05_0419 - 28814754-28816114,28816749-28817435,28817554-288177... 26 8.2
>08_01_0304 -
2502760-2502774,2502844-2502921,2503035-2503103,
2503200-2503289,2503400-2503517,2505548-2505678,
2505756-2506025,2507175-2507308,2507635-2508088
Length = 452
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 3 SRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIP 50
+R GT++ +RK +S+ P K M T+G+T+L S P
Sbjct: 53 ARASGGGTALDPKKRKRTEESAASSAAAAGPVPKKMTTAGSTTLASRP 100
>05_03_0417 -
13690127-13690229,13690644-13690705,13691248-13691330,
13691797-13691911,13692228-13692287,13693375-13693474,
13694781-13694965
Length = 235
Score = 27.9 bits (59), Expect = 2.0
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 18 KHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNS 52
K R + S++ + EKK + D + G LV+ PN+
Sbjct: 101 KKRKEESSKKNKEKKERANDSSSKGPAHLVARPNA 135
>10_08_0825 +
20831170-20831349,20831380-20831547,20831627-20831698,
20831997-20832075,20832182-20832375,20832469-20832558,
20832851-20832940,20833196-20833282,20833477-20833560,
20833690-20833809,20834096-20834103,20834443-20834575,
20835044-20835125,20835330-20835496,20836006-20836493,
20836551-20836638,20836716-20836818,20836932-20837083,
20837191-20837316,20837459-20837529,20837691-20837753,
20838418-20838490,20838972-20839040,20839180-20839257,
20839434-20839484,20839586-20839696
Length = 1008
Score = 27.1 bits (57), Expect = 3.6
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 8/77 (10%)
Query: 12 VATSQRKHRSKSSTRYDMEK----KPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLIS--- 64
+ + R+H S S + K KKK L + N+ + M +
Sbjct: 229 ICMNGRRHVSSSKNEVSRDLVVNVKSKKKQALLDVLPILTELRNAQDMQMELESFVEKEN 288
Query: 65 -FETFQIVPLYLQNLEN 80
F+ FQ++P YLQ LEN
Sbjct: 289 YFQAFQLLPEYLQILEN 305
>03_01_0363 +
2827990-2828055,2828215-2829306,2829715-2829837,
2829994-2830110,2830248-2830429,2830558-2830744,
2830846-2831055,2831177-2831305,2832179-2832247,
2832751-2832873,2832957-2833007,2833101-2833250
Length = 832
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 17 RKHRSKSSTRYDMEKKPKKKDMRTSG 42
R+ +S+ S R D +K KKK RTSG
Sbjct: 805 RQEQSRRSDRSDGAEKRKKKKRRTSG 830
>02_05_0544 +
29876337-29876524,29876850-29876882,29878390-29878577,
29879755-29879811,29879909-29880061,29880812-29881278,
29881477-29881635,29881718-29881834,29881966-29882117,
29883436-29883530,29883619-29884525,29884604-29884688,
29884775-29884843,29885045-29885224,29885367-29885495
Length = 992
Score = 26.6 bits (56), Expect = 4.7
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 8 RGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFE- 66
R V +S + SK + D+EK K D RT T + +IPN ML + + F
Sbjct: 797 RNRRVDSSVFQADSKKQYQLDLEKIRKGDDTRT--TLMIKNIPNKYTSKMLLAAIDEFHK 854
Query: 67 ---TFQIVPLYLQNLENV 81
F +P+ +N NV
Sbjct: 855 GTYDFFYLPIDFKNKCNV 872
>08_02_0830 - 21617485-21618198
Length = 237
Score = 26.2 bits (55), Expect = 6.2
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 2 SSRTGPRGTSV----ATSQRKHRSKSSTRYDMEKKPK-KKDMRTSGTTSLVS 48
SSR+ R SV + + R+ S+ R+D+ KKP+ KKD SG + S
Sbjct: 146 SSRSPCRADSVERWDSNKRPLSRASSAERWDINKKPRPKKDAVGSGKNNSTS 197
>08_01_0194 -
1603702-1603782,1603970-1604062,1604203-1604328,
1604403-1604513,1604989-1605108,1605665-1605757,
1606024-1606157,1606503-1606530,1606821-1607075,
1607167-1607401,1608147-1608193
Length = 440
Score = 25.8 bits (54), Expect = 8.2
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 43 TTSLVSIPNSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIG 87
T S VS P S + +G I FETF + LY+ ++++V+S S G
Sbjct: 125 TDSPVSTPESREC----AGEIMFETFNVPGLYI-SVQSVLSLSAG 164
>07_01_0796 + 6265106-6265304,6265723-6265963,6266063-6266423
Length = 266
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 7 PRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTS 41
P + + K + KSS + D +++ KKKD + S
Sbjct: 218 PSSPELHKKKEKKKEKSSEKKDRKERRKKKDKKKS 252
>06_01_0916 + 7058991-7059050,7060057-7061235,7061778-7063481,
7063557-7064432,7064457-7064660,7065039-7065143,
7065407-7065496,7066066-7066176,7066349-7066780
Length = 1586
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/68 (23%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 47 VSIPNSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIGAVDSLVVRIRQCYKRRSLL 106
VS+ N IK+ NSG + ++ + Y++++ V+ G ++ V + Y L
Sbjct: 1055 VSLENYIKVAASNSGSSNIQSSKTSTEYMESVGEVLD---GFFWTVTVIVGHVYLNDQQL 1111
Query: 107 RVRNGIID 114
+++ G+I+
Sbjct: 1112 QMQGGLIE 1119
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 25.8 bits (54), Expect = 8.2
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 36 KDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIGAVDSLV 93
K++RT P+ +K+ +L ++ E+F + P L++ +++ + +D LV
Sbjct: 284 KNIRTEQAKFWKQHPSLVKMELLIQAHLTGESFALTPALLKDYRHMLELAPRLLDELV 341
>02_05_0419 -
28814754-28816114,28816749-28817435,28817554-28817774,
28818536-28818750
Length = 827
Score = 25.8 bits (54), Expect = 8.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 6 GPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTS 41
G R +V+ + ++ STRY +K K+K + S
Sbjct: 138 GSRPANVSVCSKHNKDLGSTRYKSKKSKKRKGITAS 173
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.130 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,308
Number of Sequences: 37544
Number of extensions: 88967
Number of successful extensions: 365
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 357
Number of HSP's gapped (non-prelim): 12
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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