GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001961-TA|BGIBMGA001961-PA|undefined
         (114 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   0.67 
AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    24   1.2  
AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.            24   1.2  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.0 bits (52), Expect = 0.67
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 6/77 (7%)

Query: 23  SSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQIVP------LYLQ 76
           S+ +  M K   + D  T G T+   IPN    T    G ++F   Q +        YL 
Sbjct: 839 SAKQLSMRKWQSEWDCSTKGRTTHALIPNIAAWTSRKHGEVNFYMTQFLSDHGCFRSYLH 898

Query: 77  NLENVISPSIGAVDSLV 93
              +  SP   A  S+V
Sbjct: 899 KYRHASSPDCPACVSIV 915


>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-containing
            phosphoprotein protein.
          Length = 1200

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 3    SRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSG 42
            SR G R  S + S+ + RS+S +R    K  + +    SG
Sbjct: 1085 SRAGSRAGSGSRSRSRSRSRSRSRSGSAKGSRSRSRSGSG 1124


>AF444783-1|AAL37904.1| 1356|Anopheles gambiae Trex protein.
          Length = 1356

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 48  SIPNSIKLTMLNSGLIS 64
           +IPNS++L  LN  LIS
Sbjct: 613 AIPNSVELLYLNDNLIS 629


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.130    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,740
Number of Sequences: 2123
Number of extensions: 3184
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 3
length of query: 114
length of database: 516,269
effective HSP length: 56
effective length of query: 58
effective length of database: 397,381
effective search space: 23048098
effective search space used: 23048098
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)