GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001961-TA|BGIBMGA001961-PA|undefined
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.17 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    20   6.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.4 bits (53), Expect = 0.17
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 2   SSRTGPRGTSVATSQRKHRSKSSTRYDME---KKPKKKDMRTSGTTSLVSIPNS 52
           S     RG S  +S   H SKS T+ DM+   +  +  DM  +  ++   IP++
Sbjct: 389 SGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPST 442


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.2 bits (40), Expect = 6.3
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 1   MSSRTGPRGTSVATSQRKHRSKSSTRYD 28
           M   +GPRG ++ ++      +   RY+
Sbjct: 713 MCRTSGPRGVAIVSASTARSEQFLCRYE 740


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.130    0.350 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,318
Number of Sequences: 429
Number of extensions: 1008
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)