Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001961-TA|BGIBMGA001961-PA|undefined
(114 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR... 37 0.003
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 30 0.32
At5g05680.1 68418.m00625 nuclear pore complex protein-related co... 30 0.43
At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR... 29 0.57
At3g50010.1 68416.m05468 DC1 domain-containing protein contains ... 29 0.99
At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR... 28 1.3
At1g27840.1 68414.m03412 transducin family protein / WD-40 repea... 27 3.0
At1g19750.1 68414.m02469 transducin family protein / WD-40 repea... 27 3.0
At5g35670.1 68418.m04261 calmodulin-binding family protein conta... 27 4.0
At1g69545.1 68414.m07997 leucine-rich repeat family protein cont... 27 4.0
At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing ... 26 5.3
At4g38600.2 68417.m05463 HECT-domain-containing protein / ubiqui... 26 5.3
At4g38600.1 68417.m05464 HECT-domain-containing protein / ubiqui... 26 5.3
At1g29110.1 68414.m03563 cysteine proteinase, putative contains ... 26 5.3
At3g48050.2 68416.m05239 bromo-adjacent homology (BAH) domain-co... 26 7.0
At3g48050.1 68416.m05238 bromo-adjacent homology (BAH) domain-co... 26 7.0
At3g13222.1 68416.m01655 expressed protein 26 7.0
At1g16520.1 68414.m01977 expressed protein 26 7.0
At1g13670.1 68414.m01607 expressed protein 26 7.0
At5g56400.1 68418.m07040 F-box family protein contains F-box dom... 25 9.2
At3g43250.1 68416.m04565 cell cycle control protein-related cont... 25 9.2
At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase fa... 25 9.2
At2g26330.1 68415.m03159 leucine-rich repeat protein kinase, put... 25 9.2
At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR ... 25 9.2
>At5g45230.1 68418.m05551 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1231
Score = 37.1 bits (82), Expect = 0.003
Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 12/69 (17%)
Query: 42 GTTSLVSIP----NSIKLTMLNSGLISFETFQIV-----PLYLQNLE-NVISPSIGAVDS 91
G TSL+S+P NS+K T++ SG SF+TF+++ LYL E N + P+IG +
Sbjct: 714 GCTSLLSLPKITTNSLK-TLILSGCSSFQTFEVISEHLESLYLNGTEINGLPPAIGNLHR 772
Query: 92 LV-VRIRQC 99
L+ + ++ C
Sbjct: 773 LIFLNLKDC 781
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 30.3 bits (65), Expect = 0.32
Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 5/44 (11%)
Query: 2 SSRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTS 45
SS+TGP+G+ A+ ++K + S +E+KP KK +S T+S
Sbjct: 108 SSKTGPKGSGDASMRQKEKQDS-----VEQKPLKKGGDSSETSS 146
>At5g05680.1 68418.m00625 nuclear pore complex protein-related
contains weak similarity to Nuclear pore complex protein
Nup88 (Nucleoporin Nup88) (88 kDa nuclear pore complex
protein) (Swiss-Prot:Q99567) [Homo sapiens]
Length = 810
Score = 29.9 bits (64), Expect = 0.43
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 2 SSRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSG 61
S++ +GT VA SQ+K SK + D + + T SL++ NS K+ ++ S
Sbjct: 745 STQKSHKGTVVAASQKKQYSKKNLIQDTQMSQLQS---TLAKLSLMNSDNSKKVKIVESA 801
Query: 62 LISFET 67
L S E+
Sbjct: 802 LKSQES 807
>At5g45250.1 68418.m05553 disease resistance protein (TIR-NBS-LRR
class), putative (RPS4) domain signature TIR-NBS-LRR
exists, suggestive of a disease resistance protein.
Identical to RPS4 (GI:11357255). False intron created at
intron 2 to escape a frameshift in the BAC sequence.
Length = 1217
Score = 29.5 bits (63), Expect = 0.57
Identities = 16/55 (29%), Positives = 26/55 (47%)
Query: 27 YDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQIVPLYLQNLENV 81
+DM+K + G TSL S+P +++ L TF+ PL N+E +
Sbjct: 701 HDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETL 755
>At3g50010.1 68416.m05468 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 769
Score = 28.7 bits (61), Expect = 0.99
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 28 DMEKKPKKKDMRTSGTTSLVSIPNSIKL---TMLNSGLISFETFQIVPLYLQNLENVISP 84
D++ +PK + S TT +S+ NS+ L + L S L+S FQ + L+ L++ +
Sbjct: 45 DLDSQPKPESEFMSLTTQAISLFNSMDLESQSKLLSDLMSM-VFQNLSLFNSALDSEATT 103
Query: 85 SIGAVDSLV 93
G + SLV
Sbjct: 104 LFGKIISLV 112
>At5g17880.1 68418.m02097 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1197
Score = 28.3 bits (60), Expect = 1.3
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 12/89 (13%)
Query: 28 DMEKKPKKKDMRTSGTTSLVSIPN----SIKLTMLNSGLISFETFQIV-----PLYLQNL 78
DME + G TSL S+P S+K T++ SG F+TFQ++ LYL
Sbjct: 702 DMENMKFLVFLNLRGCTSLKSLPEIQLISLK-TLILSGCSKFKTFQVISDKLEALYLDGT 760
Query: 79 ENVISP-SIGAVDSLV-VRIRQCYKRRSL 105
P IG + LV + ++ C K + L
Sbjct: 761 AIKELPCDIGRLQRLVMLNMKGCKKLKRL 789
>At1g27840.1 68414.m03412 transducin family protein / WD-40 repeat
family protein contains similarity to cockayne syndrome
complementation group A protein GB:U28413 GI:975301
from [Homo sapiens]; confirmed by cDNA gi:1598289
Length = 450
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 59 NSGLISFETFQIVPLYLQNLENVISPSIGAVDSLVVRIRQ 98
NS F++ +I+ L L N ++ +SP G+V+SL V + +
Sbjct: 16 NSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTE 55
>At1g19750.1 68414.m02469 transducin family protein / WD-40 repeat
family protein similar to Cockayne syndrome
complementaion group A proteins (GI:18077663)[Mus
musculus] and (SP:Q13216)[Homo sapiens]; confirmed by
full-length cDNA GI:15982896
Length = 450
Score = 27.1 bits (57), Expect = 3.0
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 59 NSGLISFETFQIVPLYLQNLENVISPSIGAVDSLVVRIRQ 98
NS F++ +I+ L L N ++ +SP G+V+SL V + +
Sbjct: 16 NSFANRFKSRRILSLQLSNRKDFVSPHRGSVNSLQVDLTE 55
>At5g35670.1 68418.m04261 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 442
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 15 SQRKHRSKSSTRYDMEKKPKK-KDMRTSGTT 44
SQRKH +T+ D++++ KK K +T+ T+
Sbjct: 394 SQRKHHKLQATKSDLQQQTKKAKKAKTTPTS 424
>At1g69545.1 68414.m07997 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeat domains;
similar to disease resistance protein RPP1-WsA
(GI:3860163)[Arabidopsis thaliana]
Length = 703
Score = 26.6 bits (56), Expect = 4.0
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 36 KDMRTSGTTSLVSIPNSI-KLTMLNSGLISFETFQIVPLYLQNLENVISPSIGAVDSLV 93
K + SG +SLV +P+SI L + L + +P + NL N+ + SLV
Sbjct: 382 KTLNLSGCSSLVELPSSIGNLNLKKLDLSGCSSLVELPSSIGNLINLKKLDLSGCSSLV 440
>At5g10800.1 68418.m01255 RNA recognition motif (RRM)-containing
protein KIAA0332 gene, Homo sapiens, EMBL:HSAB2330
Length = 947
Score = 26.2 bits (55), Expect = 5.3
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 17 RKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLI 63
RKHRS+++ + +KKP++++ R + S N K ML L+
Sbjct: 13 RKHRSRNTEK---KKKPRRRERRMKQLVCIKSPWNRFKGIMLQLRLL 56
>At4g38600.2 68417.m05463 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12
(TRIP12) {Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1794
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 5 TGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTS 45
+ P ++ A++ R+H S+S + ++ KK + GT+S
Sbjct: 919 SSPSSSTPASTTRRHSSRSRSAINIGDTSKKDPVHEKGTSS 959
>At4g38600.1 68417.m05464 HECT-domain-containing protein /
ubiquitin-transferase family protein similar to
SP|Q14669Thyroid receptor interacting protein 12 (TRIP12)
{Homo sapiens}; contains Pfam profile PF00632:
HECT-domain (ubiquitin-transferase)
Length = 1888
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 5 TGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTS 45
+ P ++ A++ R+H S+S + ++ KK + GT+S
Sbjct: 992 SSPSSSTPASTTRRHSSRSRSAINIGDTSKKDPVHEKGTSS 1032
>At1g29110.1 68414.m03563 cysteine proteinase, putative contains
similarity to cysteine protease SPCP1 GI:13491750 from
[Ipomoea batatas]
Length = 334
Score = 26.2 bits (55), Expect = 5.3
Identities = 16/75 (21%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 1 MSSRTGPRGTSVATSQRKHRSKSSTRY---DMEKKPKKKDMRTSGTTSLVSIPNSIKLTM 57
+++ TG R + S+ +++K S + D++ + + KD R G + V + +LT
Sbjct: 96 LATHTGLRVNVTSLSELFNKTKPSRNWNMSDIDMEDESKDWRDEGAVTPVKYQGACRLTK 155
Query: 58 LN-SGLISFETFQIV 71
++ L++ Q++
Sbjct: 156 ISGKNLLTLSEQQLI 170
>At3g48050.2 68416.m05239 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 2 SSRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRT-----SGTTSLVSIPN 51
SS PRG ++ S HR+ S + +K + SG +V +PN
Sbjct: 573 SSSASPRGAGLSRSFSSHRNVPSEKISQSSLTSEKTLEVPLTEGSGNKLIVKLPN 627
>At3g48050.1 68416.m05238 bromo-adjacent homology (BAH)
domain-containing protein contains Pfam profile PF01426:
BAH domain
Length = 1613
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
Query: 2 SSRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRT-----SGTTSLVSIPN 51
SS PRG ++ S HR+ S + +K + SG +V +PN
Sbjct: 573 SSSASPRGAGLSRSFSSHRNVPSEKISQSSLTSEKTLEVPLTEGSGNKLIVKLPN 627
>At3g13222.1 68416.m01655 expressed protein
Length = 567
Score = 25.8 bits (54), Expect = 7.0
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 19 HRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTM-LNSGLISFETFQ--IVPLYL 75
H ++T K+ KK++M T+G SL ++ S + L I+F T Q I LY
Sbjct: 469 HIPSAATINATHKEEKKENMYTTGPLSLANLQASPMYNLSLQGQPIAFPTMQAGIRGLY- 527
Query: 76 QNLENVISP-SIGA 88
Q + +++P SI A
Sbjct: 528 QQTQPILAPLSISA 541
>At1g16520.1 68414.m01977 expressed protein
Length = 325
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 1 MSSRTGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNS 60
M+S PR T AT + S S Y PK+ S T + + P+S + + NS
Sbjct: 186 MTSYISPRLTPTATPKIISTSVSPRGYSAAGSPKRTSGAVSPTKATLWYPSSQQSSAANS 245
>At1g13670.1 68414.m01607 expressed protein
Length = 225
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Query: 3 SRTGPRGTSVATSQRKHRSKSSTRYDMEK------KPKKKDMRTSGTTSLVSIPNSI 53
SR + S+ T R+ R T + K KP+KK+M G L S NS+
Sbjct: 49 SRIQIQKQSIVTENRQKRVHPETEEHLPKPRVVVIKPQKKEMTRGGGKKLTSFLNSL 105
>At5g56400.1 68418.m07040 F-box family protein contains F-box domain
Pfam:PF00646
Length = 455
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 44 TSLVSIPNSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIGAVDS 91
T + S P+ L + + + F I+ YLQ+L +SP G DS
Sbjct: 201 TLISSCPSLRNLVVKRHNEDNVKRFAIIVRYLQSLTVYLSPLHGVADS 248
>At3g43250.1 68416.m04565 cell cycle control protein-related
contains similarity to Swiss-Prot:Q9P7C5 cell cycle
control protein cwf16 [Schizosaccharomyces pombe]
Length = 249
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 9 GTSVATSQRKHRSKSSTRYDMEKKPKKKDM-RTSGTTSLVS 48
G + T + K K+ +D +KK KKK R SGT ++S
Sbjct: 191 GKRIRTDEEK--KKNYEAFDEKKKKKKKPKKRDSGTVCIIS 229
>At2g33255.1 68415.m04075 haloacid dehalogenase-like hydrolase
family protein contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 224
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 28 DMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLISFETFQIVPLYLQNLENVISPSIG 87
D EK+ K GT L +S K+ GLI+ + + ++ Q E + SP++G
Sbjct: 77 DYEKQGIDKLQIMPGTAELCGFLDSKKI---KRGLITRNVQKAIDIFHQRFEVIFSPALG 133
>At2g26330.1 68415.m03159 leucine-rich repeat protein kinase,
putative (ERECTA) identical to uncharacterized receptor
protein kinase ERECTA [Arabidopsis thaliana]
gi|1389566|dbj|BAA11869; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain
Length = 976
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 67 TFQIVPLYLQ--NLENVISPSIGAVDSLV 93
TF +V L L NL+ ISP+IG + SL+
Sbjct: 67 TFNVVALNLSDLNLDGEISPAIGDLKSLL 95
>At1g59780.1 68414.m06731 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 906
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/69 (24%), Positives = 27/69 (39%)
Query: 5 TGPRGTSVATSQRKHRSKSSTRYDMEKKPKKKDMRTSGTTSLVSIPNSIKLTMLNSGLIS 64
T P +S S RS+ Y+ + DM+ S SL+ IP + S I
Sbjct: 512 TDPTSSSSVHSLASSRSRRLVVYNTSIFSGENDMKNSKLRSLLFIPVGYSRFSMGSNFIE 571
Query: 65 FETFQIVPL 73
+++ L
Sbjct: 572 LPLLRVLDL 580
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.130 0.350
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,345,144
Number of Sequences: 28952
Number of extensions: 81001
Number of successful extensions: 376
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 361
Number of HSP's gapped (non-prelim): 26
length of query: 114
length of database: 12,070,560
effective HSP length: 72
effective length of query: 42
effective length of database: 9,986,016
effective search space: 419412672
effective search space used: 419412672
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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