GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
         (212 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    38   8e-04
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    29   0.67 
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   1.6  
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb...    26   3.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    25   6.3  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    25   6.3  

>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 244

 Score = 38.3 bits (85), Expect = 8e-04
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)

Query: 22 LIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMK 57
          L  G+ +Y+ +   G D RGWGCG+R +Q + SW++
Sbjct: 22 LADGDIDYF-FTVTGID-RGWGCGWRNIQMLISWLQ 55


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 39  DRGWGCGYRTLQTICSWMKLNHMDVAVPSIREIQSILVDLEDKPKTFIGSRQWI 92
           D GWGC  R+ QT+ +    N + +  P  ++++ IL    D+P       Q++
Sbjct: 69  DTGWGCMIRSTQTLLA----NCLRICYPE-KQLKEILALFADEPSAPFSIHQFV 117


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/25 (36%), Positives = 18/25 (72%)

Query: 111 IIHINKGDDLKTIVDALVKHFIEYS 135
           ++   +G+DLK ++DAL+   +E+S
Sbjct: 566 MVENGQGEDLKRVIDALLNRAVEFS 590


>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 42  WGCGYRTLQTICSWMKLNHMDVAVPSIREIQSILVDLEDKPKTFIGSRQWIGSFEVCLVI 101
           +G GY  L++I  + K    + AVP++  I  I +    + +  I   QWI       ++
Sbjct: 469 FGVGYTQLKSIFPFAKWLQ-EAAVPNMASINDIGISRVYRRRIAIFLSQWIEDSSSEQLL 527

Query: 102 DKLFDVPCKIIHI 114
           + ++ + C  +++
Sbjct: 528 EVIYKLYCSFLNL 540


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)

Query: 5   LVNIHESLVSKQTGKSYLIKGNYEY 29
           L+N    L +K+TG SYL K   EY
Sbjct: 278 LINTKNVLGNKKTGVSYLAKKEEEY 302


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 123 IVDALVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGKQPRKNYLQD 182
           + D  + H +   SPV M      S KG++   +   G  +++ + +++G +P +  L  
Sbjct: 23  VTDIQLPHGL-VESPVFMPVGTQASLKGVLPEQLDALGCKIMLNNTYHLGLKPGQEVLDT 81

Query: 183 HG 184
            G
Sbjct: 82  VG 83


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.141    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,099,000
Number of Sequences: 5004
Number of extensions: 47959
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 6
length of query: 212
length of database: 2,362,478
effective HSP length: 70
effective length of query: 142
effective length of database: 2,012,198
effective search space: 285732116
effective search space used: 285732116
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)