Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
(212 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488... 175 2e-44
02_01_0052 + 392339-392395,392604-393400,393520-393634,393831-39... 38 0.005
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904... 30 1.2
11_01_0703 - 5785599-5785607,5785954-5786008,5786572-5786627,578... 29 3.7
01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175 29 3.7
10_01_0168 - 1883380-1883594,1884572-1888325 28 4.9
07_01_0629 - 4695778-4696077,4696242-4696406,4696497-4696673,469... 28 6.5
02_05_1253 + 35270040-35270044,35270213-35270297,35270809-352725... 28 6.5
02_05_1100 - 34108581-34108584,34109646-34109701,34110470-341105... 27 8.6
01_06_0325 - 28488446-28489369 27 8.6
01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,986... 27 8.6
>12_01_1054 +
10847342-10847543,10847627-10847962,10848557-10848807,
10849226-10849313,10849548-10849723,10850597-10850656,
10850811-10850901,10851563-10851639,10852565-10852653,
10852950-10853061,10853623-10853725,10854892-10855121
Length = 604
Score = 175 bits (427), Expect = 2e-44
Identities = 88/194 (45%), Positives = 118/194 (60%), Gaps = 12/194 (6%)
Query: 22 LIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLN-HMDVAVPSIREIQSILVDLED 80
LI G+YEYYHYL DG DD GWGC YR+LQTI SW +L + + VPS REIQ +LV++ D
Sbjct: 409 LIDGSYEYYHYLHDGIDDNGWGCAYRSLQTIMSWYRLQQYSSINVPSHREIQQVLVEIGD 468
Query: 81 KPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMM 140
K +FIGSR+WIG+ E+ V+DKL V CK+I++ GD+L L HF +PVM+
Sbjct: 469 KDPSFIGSREWIGAIELSFVLDKLLGVSCKVINVRSGDELPEKCRELAIHFETQGTPVMI 528
Query: 141 GGDVDCSSKGIMGIHIGDHG--ASLLVVDPHYVGKQPRKNYLQDHGWVKWQPLHD----- 193
GG V + ++G+ + + L++DPHY G K + + GW W+ D
Sbjct: 529 GGGV--LAYTLLGVDYNESSGDCAFLILDPHYTGADDLKK-IVNGGWCGWKKSIDSKGRS 585
Query: 194 -FLSSSFYNLCLPQ 206
FL FYNL LPQ
Sbjct: 586 FFLKDKFYNLLLPQ 599
>02_01_0052 +
392339-392395,392604-393400,393520-393634,393831-393926,
394008-394079,395286-395381
Length = 410
Score = 38.3 bits (85), Expect = 0.005
Identities = 31/128 (24%), Positives = 59/128 (46%), Gaps = 23/128 (17%)
Query: 5 LVNIHESLVSKQTGKSY-LIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLNHMDV 63
++N+ + + + G S +I G+ ++Y L +D+GWGCG+R +Q + S + +
Sbjct: 76 VMNLLRACLESEAGSSTSMISGHVDHYQSLSS--EDKGWGCGWRNIQMLSSHLLKQRPEA 133
Query: 64 A---------VPSIREIQSILVDLEDKPKTFIGS----------RQWIGSFEVCLVIDKL 104
VP I +Q L DK +GS ++WIG+ E C + +
Sbjct: 134 REALFGGSGFVPDIPSLQRWLEIAWDKKFDTLGSSHFHNKVYGAKKWIGTTE-CAALLRS 192
Query: 105 FDVPCKII 112
F + +++
Sbjct: 193 FGLRARVV 200
>03_02_0514 +
9038606-9039790,9040211-9040432,9040548-9040655,
9041608-9041802,9041905-9042153,9042525-9042672,
9042673-9042779,9043311-9043475,9044506-9045948
Length = 1273
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 28 EYYHYLCDGFDDRGWGCGYRTLQTIC-SWMKLNHMDVAVPSIREIQSILVD 77
EY H DG DDR RT +T C + KL+ + VA P++ E + VD
Sbjct: 513 EYVHPYLDGVDDRNKN---RTFKTSCFNTRKLSPVFVAGPNMDEAPPVWVD 560
>11_01_0703 -
5785599-5785607,5785954-5786008,5786572-5786627,
5786750-5786923,5787509-5787694,5787892-5788048,
5788144-5788372,5788909-5789167,5789453-5789554
Length = 408
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 4 LLVNIHESLVSKQTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLNHMDV 63
L+ IH +L + Y+ +G+ E +YL D D W Y+ ++ C +K H+++
Sbjct: 97 LVATIHRALCFE-----YMPRGSLE--NYLSDKVDGLDWPIRYKIIKGTCEGLKHLHVEM 149
Query: 64 AVP 66
P
Sbjct: 150 KPP 152
>01_06_0086 + 26293452-26294030,26295309-26295353,26295543-26296175
Length = 418
Score = 28.7 bits (61), Expect = 3.7
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 120 LKTIVDALVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVD 167
++ ++D + F+ D++C G+ G H GDH LVVD
Sbjct: 316 VELLIDTRLSPFLRRHGSESQSHDLECHLHGVAGWH-GDHRGFELVVD 362
>10_01_0168 - 1883380-1883594,1884572-1888325
Length = 1322
Score = 28.3 bits (60), Expect = 4.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 171 VGKQPR--KNYLQDHGWVKWQPLHDFLSSSFYNL 202
VGK PR YL++ GW +QPL DF Y++
Sbjct: 1287 VGK-PRVFDQYLEELGWPPYQPLWDFFGRYAYSV 1319
>07_01_0629 -
4695778-4696077,4696242-4696406,4696497-4696673,
4697157-4697455,4697589-4697751,4697897-4698088,
4698211-4698385,4698527-4698741,4698948-4699385
Length = 707
Score = 27.9 bits (59), Expect = 6.5
Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 15/117 (12%)
Query: 66 PSIREIQSILVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVD 125
P +RE+ +++DL +P S W+ S E + D L K+ ++ D+ I
Sbjct: 103 PEVRELVEVVMDLGRRPLARFPSGDWVIS-EQAVTADDLHQAVSKVGDFSE-DNRSGINH 160
Query: 126 ALVK---------HFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGK 173
+L + H I + V G + S++ I + +G G S+LV+ P VGK
Sbjct: 161 SLHRISAIRNRKAHIIGLTCRV--GRAISGSAEMIRDLVVG--GGSILVIGPPGVGK 213
>02_05_1253 +
35270040-35270044,35270213-35270297,35270809-35272590,
35272710-35273237
Length = 799
Score = 27.9 bits (59), Expect = 6.5
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 28 EYYHYLCDGFDDRGWGCGYRTLQTICSWMKLNHMDVA 64
EY+H CDG G G G ++ +I W K++ + +A
Sbjct: 67 EYHHCHCDG-GGGGGGGGLWSMDSIFRWQKVSDLLIA 102
>02_05_1100 -
34108581-34108584,34109646-34109701,34110470-34110509,
34110955-34111066,34111690-34111767,34112004-34112088,
34112596-34112664,34112763-34112886,34112924-34112988,
34113458-34113586,34114205-34114279,34117344-34117508,
34117595-34117794,34118597-34118694,34119450-34119550,
34119649-34119774
Length = 508
Score = 27.5 bits (58), Expect = 8.6
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 50 QTICSWMKLNHMDVAVPSIRE-IQSILVDLEDKPK-TFIGSRQWI 92
+TIC W + ++DV +P R +QS+L D+ K +G W+
Sbjct: 367 ETICEWPR--YIDVPLPIARVWVQSMLSQPSDEKKNNLVGDVNWL 409
>01_06_0325 - 28488446-28489369
Length = 307
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/42 (38%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 19 KSYLIKG-NYEYYHYLCDG----FDDRGWGCGYRTLQTICSW 55
KSY G N Y YL + +D + CGY L CSW
Sbjct: 38 KSYKCGGVNISYPFYLSNATGETYDYTQFSCGYTDLNITCSW 79
>01_01_1220 + 9862195-9862281,9862427-9862646,9862764-9862916,
9863016-9863674,9863749-9863852,9863950-9864192,
9864262-9864376,9864696-9864909,9864995-9865511,
9866439-9866448,9867363-9867551,9867755-9868084,
9868639-9868872,9869303-9869743
Length = 1171
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 138 VMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGK 173
++ G D D K + +HI D GA+ DP G+
Sbjct: 1114 ILRGLDYDEMEKNDVSVHIKDRGAAPAAPDPFMAGR 1149
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.141 0.454
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,038,426
Number of Sequences: 37544
Number of extensions: 307932
Number of successful extensions: 486
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 479
Number of HSP's gapped (non-prelim): 11
length of query: 212
length of database: 14,793,348
effective HSP length: 79
effective length of query: 133
effective length of database: 11,827,372
effective search space: 1573040476
effective search space used: 1573040476
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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