Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
(212 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.) 136 1e-32
SB_28090| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.54
SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09) 29 2.9
SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.0
SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09) 28 5.0
SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09) 28 5.0
SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09) 28 5.0
SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6) 28 5.0
SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.0
SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06) 28 6.6
SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.8
>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 136 bits (329), Expect = 1e-32
Identities = 62/132 (46%), Positives = 83/132 (62%), Gaps = 1/132 (0%)
Query: 14 SKQTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMK-LNHMDVAVPSIREIQ 72
S G L+ G Y Y+HY+ DGF+D GWGC YR+LQTICSW + + PS EIQ
Sbjct: 480 STPDGTVELVDGKYSYHHYMQDGFNDDGWGCAYRSLQTICSWFRHQGYTSKPAPSHHEIQ 539
Query: 73 SILVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFI 132
LVD+ DK FIGS+QWIGSFEV + ++ L V KI+++N G D+ + L+ HF
Sbjct: 540 QALVDIGDKKDNFIGSKQWIGSFEVSMCLEHLLGVTSKILYVNSGADMASKGRDLLHHFQ 599
Query: 133 EYSSPVMMGGDV 144
+P+M+GG V
Sbjct: 600 TQGTPIMIGGGV 611
>SB_28090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 222
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/16 (68%), Positives = 12/16 (75%)
Query: 39 DRGWGCGYRTLQTICS 54
D GWGCGYR LQ + S
Sbjct: 192 DAGWGCGYRNLQMLVS 207
>SB_12291| Best HMM Match : Exo_endo_phos (HMM E-Value=1.8e-09)
Length = 843
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 156 IGDHGASLLVVD--PHYVGKQPRKNYL 180
I DH A L VD P Y+ K PRK YL
Sbjct: 266 ISDHSAVLFEVDLAPKYIPKPPRKIYL 292
>SB_53367| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1025
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 156 IGDHGASLLVVD--PHYVGKQPRKNYL 180
+ DH A L VD P Y+ K PRK YL
Sbjct: 431 LSDHSAVLFEVDLAPKYIPKPPRKIYL 457
>SB_26059| Best HMM Match : Exo_endo_phos (HMM E-Value=4.5e-09)
Length = 334
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 156 IGDHGASLLVVD--PHYVGKQPRKNYL 180
+ DH A L VD P Y+ K PRK YL
Sbjct: 247 LSDHSAVLFEVDLAPKYIPKPPRKIYL 273
>SB_7003| Best HMM Match : Exo_endo_phos (HMM E-Value=4.1e-09)
Length = 378
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 156 IGDHGASLLVVD--PHYVGKQPRKNYL 180
+ DH A L VD P Y+ K PRK YL
Sbjct: 260 LSDHSAVLFEVDLAPKYIPKPPRKIYL 286
>SB_52564| Best HMM Match : Exo_endo_phos (HMM E-Value=3.2e-09)
Length = 748
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 156 IGDHGASLLVVD--PHYVGKQPRKNYL 180
+ DH A L VD P Y+ K PRK YL
Sbjct: 334 LSDHSAVLFEVDLAPKYIPKPPRKIYL 360
>SB_51419| Best HMM Match : DNA_ligase_A_C (HMM E-Value=8.6)
Length = 291
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 156 IGDHGASLLVVD--PHYVGKQPRKNYL 180
+ DH A L VD P Y+ K PRK YL
Sbjct: 49 LSDHSAVLFEVDLAPKYIPKPPRKIYL 75
>SB_11838| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1009
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 156 IGDHGASLLVVD--PHYVGKQPRKNYL 180
+ DH A L VD P Y+ K PRK YL
Sbjct: 304 LSDHSAVLFEVDLAPKYIPKPPRKIYL 330
>SB_32863| Best HMM Match : Exo_endo_phos (HMM E-Value=1.2e-06)
Length = 309
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 113 HINKGDDLKTIVDALVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVG 172
H+ K + + + L+ H I + DV + G+H+ DH A + V+
Sbjct: 224 HVTKATRITSHSETLIDHIITNMPHRVTYCDV------LPGLHVSDHDAPYIYVNVRVTR 277
Query: 173 KQPRKNYLQD 182
PR Y++D
Sbjct: 278 FVPRYKYIRD 287
>SB_47508| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2143
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 114 INKGDDLKTIVDALVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGK 173
I+KG++++ A H ++ P + CSS G + H G+ A+ + VD
Sbjct: 229 IHKGEEIEMKSRAEQLHK-SWADPEKKERSISCSSSGRVSNHSGEVPATTIQVDDAPSSS 287
Query: 174 QPRKNYLQDHGWVKWQPLHDFLSSSF 199
+ ++N +H + DF+ S F
Sbjct: 288 RAQQNDTNNH-----DDVSDFVDSLF 308
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.323 0.141 0.454
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,958,717
Number of Sequences: 59808
Number of extensions: 341832
Number of successful extensions: 592
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 12
length of query: 212
length of database: 16,821,457
effective HSP length: 79
effective length of query: 133
effective length of database: 12,096,625
effective search space: 1608851125
effective search space used: 1608851125
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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