GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
         (212 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR457278-1|CAG33559.1|  469|Homo sapiens FLJ11200 protein.            171   1e-42
BC010493-1|AAH10493.1|  469|Homo sapiens chromosome 4 open readi...   171   1e-42
AK002062-1|BAA92064.1|  469|Homo sapiens protein ( Homo sapiens ...   171   1e-42
BC067904-1|AAH67904.1|  142|Homo sapiens similar to RIKEN cDNA 2...    99   6e-21
AF312032-2|AAK21004.1|  142|Homo sapiens unknown protein.              99   1e-20
BX537872-1|CAD97873.1|  578|Homo sapiens hypothetical protein pr...    43   7e-04
BC016879-1|AAH16879.1|  578|Homo sapiens chromosome 6 open readi...    43   7e-04
AL132795-3|CAI20498.1|  578|Homo sapiens RP3-412I7.3 protein.          43   7e-04
AK054582-1|BAB70765.1|  578|Homo sapiens protein ( Homo sapiens ...    43   7e-04

>CR457278-1|CAG33559.1|  469|Homo sapiens FLJ11200 protein.
          Length = 469

 Score =  171 bits (417), Expect = 1e-42
 Identities = 82/194 (42%), Positives = 122/194 (62%), Gaps = 6/194 (3%)

Query: 16  QTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMK-LNHMDVAVPSIREIQSI 74
           +TG  Y+++G Y Y+HY+ D  DD GWGC YR+LQTICSW K   + + ++P+ REIQ  
Sbjct: 274 ETGMIYVVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQA 333

Query: 75  LVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEY 134
           LVD  DKP TF+GSRQWIGS EV LV+++L  +  KI+ +++G ++ +    L  HF   
Sbjct: 334 LVDAGDKPATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSE 393

Query: 135 SSPVMMGGDVDCSSKGIMGIHIGDHGASL--LVVDPHYVGKQPRKNYLQDHGWVKWQPLH 192
            +PVM+GG V   +  I+G+   +    +  L++DPHY G +  +  L + GW  W+   
Sbjct: 394 GTPVMIGGGV--LAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVIL-EKGWCGWKGPD 450

Query: 193 DFLSSSFYNLCLPQ 206
            +   ++YNLCLPQ
Sbjct: 451 FWNKDAYYNLCLPQ 464


>BC010493-1|AAH10493.1|  469|Homo sapiens chromosome 4 open reading
           frame 20 protein.
          Length = 469

 Score =  171 bits (417), Expect = 1e-42
 Identities = 82/194 (42%), Positives = 122/194 (62%), Gaps = 6/194 (3%)

Query: 16  QTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMK-LNHMDVAVPSIREIQSI 74
           +TG  Y+++G Y Y+HY+ D  DD GWGC YR+LQTICSW K   + + ++P+ REIQ  
Sbjct: 274 ETGMIYVVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQA 333

Query: 75  LVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEY 134
           LVD  DKP TF+GSRQWIGS EV LV+++L  +  KI+ +++G ++ +    L  HF   
Sbjct: 334 LVDAGDKPATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSE 393

Query: 135 SSPVMMGGDVDCSSKGIMGIHIGDHGASL--LVVDPHYVGKQPRKNYLQDHGWVKWQPLH 192
            +PVM+GG V   +  I+G+   +    +  L++DPHY G +  +  L + GW  W+   
Sbjct: 394 GTPVMIGGGV--LAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVIL-EKGWCGWKGPD 450

Query: 193 DFLSSSFYNLCLPQ 206
            +   ++YNLCLPQ
Sbjct: 451 FWNKDAYYNLCLPQ 464


>AK002062-1|BAA92064.1|  469|Homo sapiens protein ( Homo sapiens
           cDNA FLJ11200 fis, clone PLACE1007725. ).
          Length = 469

 Score =  171 bits (417), Expect = 1e-42
 Identities = 82/194 (42%), Positives = 122/194 (62%), Gaps = 6/194 (3%)

Query: 16  QTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMK-LNHMDVAVPSIREIQSI 74
           +TG  Y+++G Y Y+HY+ D  DD GWGC YR+LQTICSW K   + + ++P+ REIQ  
Sbjct: 274 ETGMIYVVQGIYGYHHYMQDRIDDNGWGCAYRSLQTICSWFKHQGYTERSIPTHREIQQA 333

Query: 75  LVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEY 134
           LVD  DKP TF+GSRQWIGS EV LV+++L  +  KI+ +++G ++ +    L  HF   
Sbjct: 334 LVDAGDKPATFVGSRQWIGSIEVQLVLNQLIGITSKILFVSQGSEIASQGRELANHFQSE 393

Query: 135 SSPVMMGGDVDCSSKGIMGIHIGDHGASL--LVVDPHYVGKQPRKNYLQDHGWVKWQPLH 192
            +PVM+GG V   +  I+G+   +    +  L++DPHY G +  +  L + GW  W+   
Sbjct: 394 GTPVMIGGGV--LAHTILGVAWNEITGQIKFLILDPHYTGAEDLQVIL-EKGWCGWKGPD 450

Query: 193 DFLSSSFYNLCLPQ 206
            +   ++YNLCLPQ
Sbjct: 451 FWNKDAYYNLCLPQ 464


>BC067904-1|AAH67904.1|  142|Homo sapiens similar to RIKEN cDNA
           2700038N03 protein.
          Length = 142

 Score =   99 bits (238), Expect = 6e-21
 Identities = 53/133 (39%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 80  DKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVM 139
           DKP  F GSR WIG  E  L +        ++ H+ +G  L   V+ L  HF     PVM
Sbjct: 3   DKPPGFRGSRDWIGCVEASLCLAHFGGPQGRLCHVPRGVGLHGEVERLYSHFAGGGGPVM 62

Query: 140 MGGDVDCSSKGIMGIHIGD-HGASLLVVDPHYVGKQPRKNYLQDHGWVKWQPLH-DFLSS 197
           +GGD D  SK ++G+ +G    A +LV+DPHY G     + LQ  GWV WQ +   F  +
Sbjct: 63  VGGDADARSKALLGVCVGSGTEAYVLVLDPHYWGTPKSPSELQAAGWVGWQEVSAAFDPN 122

Query: 198 SFYNLCLPQVKAK 210
           SFYNLCL  + ++
Sbjct: 123 SFYNLCLTSLSSQ 135


>AF312032-2|AAK21004.1|  142|Homo sapiens unknown protein.
          Length = 142

 Score = 98.7 bits (235), Expect = 1e-20
 Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 80  DKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVM 139
           DKP  F GSR WIG  E  L +        ++ H+ +G  L   ++ L  HF     PVM
Sbjct: 3   DKPPGFRGSRDWIGCVEASLCLAHFGGPQGRLCHVPRGVGLHGELERLYSHFAGGGGPVM 62

Query: 140 MGGDVDCSSKGIMGIHIGD-HGASLLVVDPHYVGKQPRKNYLQDHGWVKWQPLH-DFLSS 197
           +GGD D  SK ++G+ +G    A +LV+DPHY G     + LQ  GWV WQ +   F  +
Sbjct: 63  VGGDADARSKALLGVCVGSGTEAYVLVLDPHYWGTPKSPSELQAAGWVGWQEVSAAFDPN 122

Query: 198 SFYNLCLPQVKAK 210
           SFYNLCL  + ++
Sbjct: 123 SFYNLCLTSLSSQ 135


>BX537872-1|CAD97873.1|  578|Homo sapiens hypothetical protein
           protein.
          Length = 578

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query: 39  DRGWGCGYRTLQTICSWMKLNH------MDVAVPSIREIQSILVD----------LEDKP 82
           D+GWGCGYR  Q + S +  N         + +P I +IQS++ D               
Sbjct: 355 DKGWGCGYRNFQMLLSSLLQNDAYNDCLKGMLIPCIPKIQSMIEDAWKEGFDPQGASQLN 414

Query: 83  KTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGG 142
               G++ WIG+ EV +++  L  V C I+  +K          L +  + Y S    G 
Sbjct: 415 NRLQGTKAWIGACEVYILLTSL-RVKCHIVDFHKSTGPLGTHPRLFEWILNYYSSEGEGS 473

Query: 143 -DVDCSSKGIMGIHIGDHGASLLVVD 167
             V C+SK  + +    H  +++ ++
Sbjct: 474 PKVVCTSKPPIYLQHQGHSRTVIGIE 499


>BC016879-1|AAH16879.1|  578|Homo sapiens chromosome 6 open reading
           frame 113 protein.
          Length = 578

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query: 39  DRGWGCGYRTLQTICSWMKLNH------MDVAVPSIREIQSILVD----------LEDKP 82
           D+GWGCGYR  Q + S +  N         + +P I +IQS++ D               
Sbjct: 355 DKGWGCGYRNFQMLLSSLLQNDAYNDCLKGMLIPCIPKIQSMIEDAWKEGFDPQGASQLN 414

Query: 83  KTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGG 142
               G++ WIG+ EV +++  L  V C I+  +K          L +  + Y S    G 
Sbjct: 415 NRLQGTKAWIGACEVYILLTSL-RVKCHIVDFHKSTGPLGTHPRLFEWILNYYSSEGEGS 473

Query: 143 -DVDCSSKGIMGIHIGDHGASLLVVD 167
             V C+SK  + +    H  +++ ++
Sbjct: 474 PKVVCTSKPPIYLQHQGHSRTVIGIE 499


>AL132795-3|CAI20498.1|  578|Homo sapiens RP3-412I7.3 protein.
          Length = 578

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query: 39  DRGWGCGYRTLQTICSWMKLNH------MDVAVPSIREIQSILVD----------LEDKP 82
           D+GWGCGYR  Q + S +  N         + +P I +IQS++ D               
Sbjct: 355 DKGWGCGYRNFQMLLSSLLQNDAYNDCLKGMLIPCIPKIQSMIEDAWKEGFDPQGASQLN 414

Query: 83  KTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGG 142
               G++ WIG+ EV +++  L  V C I+  +K          L +  + Y S    G 
Sbjct: 415 NRLQGTKAWIGACEVYILLTSL-RVKCHIVDFHKSTGPLGTHPRLFEWILNYYSSEGEGS 473

Query: 143 -DVDCSSKGIMGIHIGDHGASLLVVD 167
             V C+SK  + +    H  +++ ++
Sbjct: 474 PKVVCTSKPPIYLQHQGHSRTVIGIE 499


>AK054582-1|BAB70765.1|  578|Homo sapiens protein ( Homo sapiens
           cDNA FLJ30020 fis, clone 3NB692000912. ).
          Length = 578

 Score = 43.2 bits (97), Expect = 7e-04
 Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 18/146 (12%)

Query: 39  DRGWGCGYRTLQTICSWMKLNH------MDVAVPSIREIQSILVD----------LEDKP 82
           D+GWGCGYR  Q + S +  N         + +P I +IQS++ D               
Sbjct: 355 DKGWGCGYRNFQMLLSSLLQNDAYDDCLKGMLIPCIPKIQSMIEDAWKEGFDPQGASQLN 414

Query: 83  KTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGG 142
               G++ WIG+ EV +++  L  V C I+  +K          L +  + Y S    G 
Sbjct: 415 NRLQGTKAWIGACEVYILLTSL-RVKCHIVDFHKSTGPLGTHPRLFEWILNYYSSEGEGS 473

Query: 143 -DVDCSSKGIMGIHIGDHGASLLVVD 167
             V C+SK  + +    H  +++ ++
Sbjct: 474 PKVVCTSKPPIYLQHQGHSRTVIGIE 499


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.323    0.141    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,435,622
Number of Sequences: 224733
Number of extensions: 1441591
Number of successful extensions: 2057
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2031
Number of HSP's gapped (non-prelim): 9
length of query: 212
length of database: 73,234,838
effective HSP length: 87
effective length of query: 125
effective length of database: 53,683,067
effective search space: 6710383375
effective search space used: 6710383375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 63 (29.5 bits)