GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
         (212 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical pr...   170   6e-43
U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical pr...   170   6e-43
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    31   0.62 
Z73427-6|CAA97798.1|  392|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC024753-7|AAF60459.1|  196|Caenorhabditis elegans Hypothetical ...    28   5.8  

>U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical
           protein F38A5.1b protein.
          Length = 575

 Score =  170 bits (414), Expect = 6e-43
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 7/202 (3%)

Query: 9   HESLVSKQ-TGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLN-HMDVAVP 66
           H S+ + Q  G+   + G Y Y+HY+ DG DD GWGC YR+ QTI SW  LN + D  VP
Sbjct: 371 HLSITNYQPVGEITTVNGPYNYHHYMQDGIDDSGWGCAYRSFQTIWSWFILNGYTDKPVP 430

Query: 67  SIREIQSILVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDA 126
           S REIQ  LVD++DK   F+GSRQWIGS E+  V+++L  + C+ I  N G ++   V  
Sbjct: 431 SHREIQQALVDIQDKQAKFVGSRQWIGSTEISFVLNELLKLECRFIATNSGAEVVERVRE 490

Query: 127 LVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGD--HGASLLVVDPHYVGKQPRKNYLQDHG 184
           L +HF    +PVM+GG++   +  I+G+   D       LV+DPHY G +  K  +   G
Sbjct: 491 LARHFETSGTPVMIGGNM--LAHTILGVDFNDTTGETKFLVLDPHYTGSEDIKT-ITSKG 547

Query: 185 WVKWQPLHDFLSSSFYNLCLPQ 206
           W  W+P   +    FYN+ LPQ
Sbjct: 548 WCAWKPASFWSKDHFYNMVLPQ 569


>U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical
           protein F38A5.1a protein.
          Length = 589

 Score =  170 bits (414), Expect = 6e-43
 Identities = 85/202 (42%), Positives = 118/202 (58%), Gaps = 7/202 (3%)

Query: 9   HESLVSKQ-TGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLN-HMDVAVP 66
           H S+ + Q  G+   + G Y Y+HY+ DG DD GWGC YR+ QTI SW  LN + D  VP
Sbjct: 385 HLSITNYQPVGEITTVNGPYNYHHYMQDGIDDSGWGCAYRSFQTIWSWFILNGYTDKPVP 444

Query: 67  SIREIQSILVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDA 126
           S REIQ  LVD++DK   F+GSRQWIGS E+  V+++L  + C+ I  N G ++   V  
Sbjct: 445 SHREIQQALVDIQDKQAKFVGSRQWIGSTEISFVLNELLKLECRFIATNSGAEVVERVRE 504

Query: 127 LVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGD--HGASLLVVDPHYVGKQPRKNYLQDHG 184
           L +HF    +PVM+GG++   +  I+G+   D       LV+DPHY G +  K  +   G
Sbjct: 505 LARHFETSGTPVMIGGNM--LAHTILGVDFNDTTGETKFLVLDPHYTGSEDIKT-ITSKG 561

Query: 185 WVKWQPLHDFLSSSFYNLCLPQ 206
           W  W+P   +    FYN+ LPQ
Sbjct: 562 WCAWKPASFWSKDHFYNMVLPQ 583


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 31  HYLCDGFDDRGWGCGYRTLQTICSWMKLNHMD 62
           H L  G+DD G   G+    T CSW K   MD
Sbjct: 614 HELTHGYDDEGVQFGFNGELTDCSWNKCGWMD 645


>Z73427-6|CAA97798.1|  392|Caenorhabditis elegans Hypothetical
           protein F58B3.6 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 67  SIREIQSILVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIH 113
           ++R+I++ + D +D P+  +   Q   S + C  I   +D  C ++H
Sbjct: 286 AVRDIRAFIADEDDAPEVNVKIGQQTLSLDSC-AIKIFYDTTCDLLH 331


>AC024753-7|AAF60459.1|  196|Caenorhabditis elegans Hypothetical
          protein Y23H5B.3 protein.
          Length = 196

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 34 CDGFDDRGWGCGYRTLQTICSWMKLNHMDVAVPSIREIQSILVD 77
          CDG  D  +GC   +L  I  W+     +  +PS++  QS+  D
Sbjct: 21 CDGHYDLEYGCNKLSLDLIRDWIS----NKPLPSVKAAQSLYSD 60


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.141    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,871,722
Number of Sequences: 27539
Number of extensions: 253112
Number of successful extensions: 433
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 424
Number of HSP's gapped (non-prelim): 5
length of query: 212
length of database: 12,573,161
effective HSP length: 78
effective length of query: 134
effective length of database: 10,425,119
effective search space: 1396965946
effective search space used: 1396965946
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)