GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
         (212 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   6.6  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 57  KLNHMDVAVPSIREIQSILVDLEDKPKTFI 86
           K ++ D+  P++ E+Q  L  L+D  + FI
Sbjct: 103 KSDNEDITYPTVLEVQLNLPILKDGVQIFI 132


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 57  KLNHMDVAVPSIREIQSILVDLEDKPKTFI 86
           K ++ D+  P++ E+Q  L  L+D  + FI
Sbjct: 141 KSDNEDITYPTVLEVQLNLPILKDGVQIFI 170


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 42  WGCGYRTLQTICSWMKLN 59
           W C  + LQ + SW+  N
Sbjct: 926 WSCRCKFLQELSSWVSDN 943


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.141    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,885
Number of Sequences: 429
Number of extensions: 2901
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 3
length of query: 212
length of database: 140,377
effective HSP length: 55
effective length of query: 157
effective length of database: 116,782
effective search space: 18334774
effective search space used: 18334774
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 42 (21.0 bits)