GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001960-TA|BGIBMGA001960-PA|IPR012462|Protein of unknown
function DUF1671
         (212 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48380.2 68416.m05281 expressed protein                            184   4e-47
At3g48380.1 68416.m05280 expressed protein                            184   4e-47
At5g24680.1 68418.m02917 expressed protein similar to unknown pr...    34   0.062
At2g20610.2 68415.m02412 aminotransferase, putative similar to n...    29   3.1  
At2g20610.1 68415.m02411 aminotransferase, putative similar to n...    29   3.1  
At5g64720.1 68418.m08139 hypothetical protein                          27   7.2  
At5g28360.1 68418.m03444 1-aminocyclopropane-1-carboxylate synth...    27   7.2  
At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase fa...    27   9.5  
At1g32900.1 68414.m04053 starch synthase, putative similar to st...    27   9.5  

>At3g48380.2 68416.m05281 expressed protein
          Length = 640

 Score =  184 bits (448), Expect = 4e-47
 Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 10/214 (4%)

Query: 2   SNLLVNIHESLVSK--QTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLN 59
           S LL ++H  + S     G + +I+G+YEYYHYL DGFDD GWGC YR+LQTI SW +L 
Sbjct: 423 STLLKDVHIGIPSSGVSEGVASIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQ 482

Query: 60  HM-DVAVPSIREIQSILVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGD 118
           H   ++VPS REIQ  LV++ DK  +F+GSR+WIG+ E+  V+DKL  V CKI++   G 
Sbjct: 483 HYTSISVPSHREIQQTLVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKIMNFRSGS 542

Query: 119 DLKTIVDALVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGKQPRKN 178
           +L      L  HF    +P+M+GG V   +   +    G    + L++DPHY G +  K 
Sbjct: 543 ELPEKCRELAMHFENQGTPIMIGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKK 602

Query: 179 YLQDHGWVKWQPLHD------FLSSSFYNLCLPQ 206
            + + GW  W+   D      FL + FYNL LPQ
Sbjct: 603 -IVNGGWCGWKKAVDSKGKSFFLHNKFYNLLLPQ 635


>At3g48380.1 68416.m05280 expressed protein
          Length = 645

 Score =  184 bits (448), Expect = 4e-47
 Identities = 92/214 (42%), Positives = 127/214 (59%), Gaps = 10/214 (4%)

Query: 2   SNLLVNIHESLVSK--QTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWMKLN 59
           S LL ++H  + S     G + +I+G+YEYYHYL DGFDD GWGC YR+LQTI SW +L 
Sbjct: 428 STLLKDVHIGIPSSGVSEGVASIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQ 487

Query: 60  HM-DVAVPSIREIQSILVDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKIIHINKGD 118
           H   ++VPS REIQ  LV++ DK  +F+GSR+WIG+ E+  V+DKL  V CKI++   G 
Sbjct: 488 HYTSISVPSHREIQQTLVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKIMNFRSGS 547

Query: 119 DLKTIVDALVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGKQPRKN 178
           +L      L  HF    +P+M+GG V   +   +    G    + L++DPHY G +  K 
Sbjct: 548 ELPEKCRELAMHFENQGTPIMIGGGVLAYTLLGVDYDEGSGDCAFLILDPHYTGSEDHKK 607

Query: 179 YLQDHGWVKWQPLHD------FLSSSFYNLCLPQ 206
            + + GW  W+   D      FL + FYNL LPQ
Sbjct: 608 -IVNGGWCGWKKAVDSKGKSFFLHNKFYNLLLPQ 640


>At5g24680.1 68418.m02917 expressed protein similar to unknown
           protein (pir||T38384)
          Length = 399

 Score = 34.3 bits (75), Expect = 0.062
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 22/95 (23%)

Query: 38  DDRGWGCGYRTLQTICSWMKLNHMDVA----------VPSIREIQSILVDLEDK------ 81
           +D+GWGCG++ +Q  CS + L+H + A          VP I  +Q  L    +K      
Sbjct: 124 EDKGWGCGWKNIQMQCSHL-LSHREEAKRVLFGGSNFVPDIPSLQRWLELAWNKGFDVSG 182

Query: 82  ----PKTFIGSRQWIGSFEVCLVIDKLFDVPCKII 112
                    GS++WIG+ E C  + + F +  +I+
Sbjct: 183 ALHFDNRICGSKRWIGTTE-CAALLRSFGLKARIV 216


>At2g20610.2 68415.m02412 aminotransferase, putative similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 436

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 60  HMDVAVPSIREIQSIL-VDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKI 111
           ++DV       IQ+ L   LE   K F   +  I    V LV D+L D+PC +
Sbjct: 309 NLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVV 361


>At2g20610.1 68415.m02411 aminotransferase, putative similar to
           nicotianamine aminotransferase from Hordeum vulgare
           [GI:6498122, GI:6469087]; contains Pfam profile PF00155
           aminotransferase, classes I and II
          Length = 462

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 60  HMDVAVPSIREIQSIL-VDLEDKPKTFIGSRQWIGSFEVCLVIDKLFDVPCKI 111
           ++DV       IQ+ L   LE   K F   +  I    V LV D+L D+PC +
Sbjct: 309 NLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVV 361


>At5g64720.1 68418.m08139 hypothetical protein
          Length = 155

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 6/48 (12%)

Query: 115 NKGDDLKTIVDALVKHFIEY---SSPVMMGG-DVDCSSKGIMGIHIGD 158
           N G +LK+  D +VK F+     S P + GG D DC   G +G+ + D
Sbjct: 55  NAGLELKSCTDEIVKFFLSQTGTSEPPVKGGIDKDCC--GAIGLVVKD 100


>At5g28360.1 68418.m03444 1-aminocyclopropane-1-carboxylate
           synthase, putative / ACC synthase, putative similar to
           1-aminocyclopropane-1-carboxylate synthase 1 [Lupinus
           albus] GI:6650976; contains Pfam profile PF00155:
           Aminotransferase class I and II
          Length = 168

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 138 VMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGKQPRKNYLQ 181
           V+M G    +++ IM   + D G + LV  P+Y   + ++NYL+
Sbjct: 121 VVMSGGATGANETIM-FCLADPGDAFLVPTPYYAAYREKENYLR 163


>At2g25870.1 68415.m03105 haloacid dehalogenase-like hydrolase
           family protein contains Pfam profiles PF00702: haloacid
           dehalogenase-like hydrolase, PF02130: Uncharacterized
           protein family UPF0054
          Length = 584

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 106 DVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGGDV 144
           D  CK+    +G+D  T V ++ +H  E   PV+M GD+
Sbjct: 174 DFICKLNKEWRGEDHATDVLSMSQHVPELKLPVLMMGDL 212


>At1g32900.1 68414.m04053 starch synthase, putative similar to
           starch synthase SP:Q42857 from [Ipomoea batatas]
          Length = 610

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 130 HFIEYSS-PVMM--GGDVDCSSKGIMGIHIGDHGASLLVVDP 168
           H + Y + P++   GG VD    G  G HIG       VVDP
Sbjct: 494 HAMRYGTVPIVASTGGLVDTVKDGYTGFHIGRFNVKCEVVDP 535


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.141    0.454 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,776,099
Number of Sequences: 28952
Number of extensions: 254493
Number of successful extensions: 449
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 437
Number of HSP's gapped (non-prelim): 9
length of query: 212
length of database: 12,070,560
effective HSP length: 78
effective length of query: 134
effective length of database: 9,812,304
effective search space: 1314848736
effective search space used: 1314848736
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)