GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001957-TA|BGIBMGA001957-PA|IPR001876|Zinc finger,
RanBP2-type
         (733 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    25   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   3.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             24   3.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    24   5.1  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   5.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   6.7  
DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex det...    23   8.9  
DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex det...    23   8.9  
DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex det...    23   8.9  
DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex det...    23   8.9  
DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex det...    23   8.9  
DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex det...    23   8.9  
DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex det...    23   8.9  
DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex det...    23   8.9  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    23   8.9  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   8.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   8.9  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 345 QLIEIESNYENGKFERYRDEDRHKRRQESSRRNSTSKSGFSDVT 388
           +L+E  +N +     R R+++ +K  +E  +   TSK    D T
Sbjct: 27  KLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSKERSRDRT 70


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 584 QEIEKPKGKTAENGHQNTAHSSKTNASS 611
           +EI     K +++G+ NT  +S++  SS
Sbjct: 3   EEISTENAKVSDSGYSNTCSNSQSQRSS 30


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 584 QEIEKPKGKTAENGHQNTAHSSKTNASS 611
           +EI     K +++G+ NT  +S++  SS
Sbjct: 3   EEISTENAKVSDSGYSNTCSNSQSQRSS 30


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 345 QLIEIESNYENGKFERYRDEDRHKRRQESSRRNSTSKSGFSD 386
           +L+E  +N +     R R+++ +K  +E  +   TSK    D
Sbjct: 27  KLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSKERSRD 68


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 5.1
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 687 GKSRRGPQIEPLTSGGRECPACTLVNQRD 715
           G   +GP+  P +   +  P C L N+RD
Sbjct: 59  GPGSKGPRDFPRSHRFKSLPRCQLSNKRD 87


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 571 EVKKVRKPAKLVAQEIEKPKGKTAENGHQNTAHSSKTNASSSPQSYD--LKAQLIVSLDE 628
           ++ +  +P  L  Q I+        N      HS++++AS+SP  Y+    +  ++ L  
Sbjct: 2   KIMQTTQPVSLQTQRIQGLY-LLDNNDSSGIPHSAESSASNSPDHYERFSPSTHLMDLSS 60

Query: 629 PDQVRRSP 636
           P + R  P
Sbjct: 61  PPEHRDLP 68


>DQ325102-1|ABD14116.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>DQ325101-1|ABD14115.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>DQ325100-1|ABD14114.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>DQ325099-1|ABD14113.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>DQ325098-1|ABD14112.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>DQ325097-1|ABD14111.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>DQ325096-1|ABD14110.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>DQ325095-1|ABD14109.1|  183|Apis mellifera complementary sex
           determiner protein.
          Length = 183

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 32  ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 79


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 13/50 (26%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 474 DRTYDEEMYRTAKVNENLMRMKQEQESKRTKQLAKKQTDERRTR-KATEP 522
           +RT  +   R+ +  +N    K E+E ++ ++ +K+++ +RR R ++ EP
Sbjct: 254 ERTSRKRYSRSREREQN--SYKNEREYRKYRETSKERSRDRRERERSKEP 301


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 10/42 (23%), Positives = 21/42 (50%)

Query: 345 QLIEIESNYENGKFERYRDEDRHKRRQESSRRNSTSKSGFSD 386
           + +E  ++++     R R++  +K  +E  +   TSK  F D
Sbjct: 261 KFLEERTSHKRYSRSREREQKSYKNEREYRKYRETSKERFRD 302


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 635 SPPGQNGENRPASRTSSSHEKEKPANQTKTGKWECATCTY 674
           SP   N    PA + +S+      + Q   G  +CAT  Y
Sbjct: 737 SPRSPNASPSPAEQCASTTTITARSPQGSQGLLQCATSNY 776


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.130    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,132
Number of Sequences: 429
Number of extensions: 10275
Number of successful extensions: 58
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 18
length of query: 733
length of database: 140,377
effective HSP length: 63
effective length of query: 670
effective length of database: 113,350
effective search space: 75944500
effective search space used: 75944500
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)