Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001956-TA|BGIBMGA001956-PA|IPR002048|Calcium-binding
EF-hand
(1073 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24) 50 1e-05
SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12) 48 4e-05
SB_23229| Best HMM Match : efhand (HMM E-Value=6.8e-25) 45 3e-04
SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25) 44 7e-04
SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26) 44 7e-04
SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 9e-04
SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 0.002
SB_38215| Best HMM Match : efhand (HMM E-Value=0.81) 42 0.004
SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10) 36 0.23
SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29) 36 0.23
SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2) 35 0.31
SB_16004| Best HMM Match : efhand (HMM E-Value=1.7) 35 0.40
SB_10626| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 2.2
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11) 32 2.8
SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41) 31 3.8
SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8) 31 3.8
SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7) 31 3.8
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 5.0
SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13) 31 5.0
SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07) 31 6.6
SB_39543| Best HMM Match : efhand (HMM E-Value=0.00063) 31 6.6
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 31 6.6
SB_35537| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 6.6
SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0) 30 8.7
SB_48962| Best HMM Match : Cadherin (HMM E-Value=0) 30 8.7
SB_36447| Best HMM Match : Trp_repressor (HMM E-Value=2.5) 30 8.7
SB_31447| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.7
SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 8.7
>SB_13634| Best HMM Match : efhand (HMM E-Value=2e-24)
Length = 176
Score = 49.6 bits (113), Expect = 1e-05
Identities = 27/98 (27%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 915 KLEADYQYRFSKEDIVNKFEVLRNNPFQDRLFRVFSSHDDGRFSFEDLLDLCSAMCPECP 974
KL+ D S E+ ++ E L+ NP R+ +F + +G F++ ++ S +
Sbjct: 50 KLDLDNSGSLSVEEFMSLPE-LQQNPLVQRVITIFDADGNGEVDFKEFIEGVSQFSVKGD 108
Query: 975 LEVKAAWAFKVFDLDDDNQISAKDICQIIDRLTWTGNN 1012
E K +AF+++D+D+D IS ++ Q++ + GNN
Sbjct: 109 KESKLKFAFRIYDMDNDGYISNGELFQVLKMM--VGNN 144
>SB_53403| Best HMM Match : efhand (HMM E-Value=2.8e-12)
Length = 146
Score = 48.0 bits (109), Expect = 4e-05
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 941 FQDRLFRVFSSHDDGRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDIC 1000
F +FR F GR F++ + S + L+ K WAF+++D+++D IS ++
Sbjct: 63 FALHVFRTFDDDRSGRIDFKEFMSSLS-VTSRGNLDEKLEWAFRIYDINNDGSISRMEMI 121
Query: 1001 QIIDRLTWTGNNRSNFLDRES 1021
+II+ +NRS+ +D S
Sbjct: 122 EIIEAYKVGRSNRSSQIDSSS 142
>SB_23229| Best HMM Match : efhand (HMM E-Value=6.8e-25)
Length = 191
Score = 45.2 bits (102), Expect = 3e-04
Identities = 27/109 (24%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 896 DNVDFPKSLMKKFYS-INPDKLEADYQYRFSKEDIVNKFEVLRNNPFQDRLFRVFSSHDD 954
+N +F ++ ++++Y D + K+ N F + F + +FR F ++ D
Sbjct: 18 NNTEFSETELQEWYKGFLKDCPDGSLSVEEFKKIYGNFFPYGDASKFAEHVFRTFDANGD 77
Query: 955 GRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDICQII 1003
G F + + S + LE K WAF ++DLD + IS +++ +I+
Sbjct: 78 GTIDFREFICALS-VTSRGKLEEKLKWAFSMYDLDGNGYISRQEMLEIV 125
>SB_23228| Best HMM Match : efhand (HMM E-Value=6.8e-25)
Length = 190
Score = 44.0 bits (99), Expect = 7e-04
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 941 FQDRLFRVFSSHDDGRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDIC 1000
F + +FR F ++ DG F + + S + LE K WAF ++DLD + IS +++
Sbjct: 64 FAEHVFRTFDANGDGTIDFREFICALS-VTSRGKLEQKLKWAFSMYDLDGNGYISRQEML 122
Query: 1001 QII 1003
+I+
Sbjct: 123 EIV 125
>SB_23227| Best HMM Match : efhand (HMM E-Value=4.8e-26)
Length = 776
Score = 44.0 bits (99), Expect = 7e-04
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 941 FQDRLFRVFSSHDDGRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDIC 1000
F + +FR F + DG F + + S + LE K WAF ++DLD + IS +++
Sbjct: 64 FAEHVFRTFDKNGDGTIDFREFICALS-VTSRGKLEQKLKWAFNMYDLDGNGYISRQEML 122
Query: 1001 QIIDRL 1006
+I+ +
Sbjct: 123 EIVQAI 128
>SB_11953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 214
Score = 43.6 bits (98), Expect = 9e-04
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Query: 941 FQDRLFRVFSSHDDGRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDIC 1000
F +F VF + DG F + + S + ++ K WAFK++DLD D I+ +++
Sbjct: 55 FASFVFNVFDENKDGHIEFREFICALS-VTSRGSIDEKLQWAFKLYDLDGDGCITKQEML 113
Query: 1001 QIIDRL 1006
I+D +
Sbjct: 114 HIVDSI 119
>SB_35284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 42.3 bits (95), Expect = 0.002
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 941 FQDRLFRVFSSHDDGRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDIC 1000
F +FR F ++DG F + + S + E K WAF+++D D ++S K++
Sbjct: 67 FAGHVFRTFDKNNDGTIDFNEFIQGLSIISRGSK-ETKLRWAFEIYDSDGSGEVSKKEML 125
Query: 1001 QII 1003
+I+
Sbjct: 126 EIV 128
>SB_38215| Best HMM Match : efhand (HMM E-Value=0.81)
Length = 35
Score = 41.5 bits (93), Expect = 0.004
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 939 NPFQDRLFRVFSSHDDGRFSFEDLLDLCS 967
NPF+DR+ +VFSS DG +FED LD+ S
Sbjct: 2 NPFRDRICKVFSSSKDGSLTFEDFLDMMS 30
>SB_41992| Best HMM Match : efhand (HMM E-Value=2.4e-10)
Length = 1303
Score = 35.5 bits (78), Expect = 0.23
Identities = 22/90 (24%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 945 LFRVFSSHDDGRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDICQIID 1004
LF+ F ++DG F ++ SA C E + + F+VFD D D +S +D +++
Sbjct: 46 LFQAFDENNDGHIDFREMACGISACCRGSSSE-RQQFCFRVFDCDQDGFLS-RDELELMS 103
Query: 1005 RLTWTGNNRSNFLDRESKAKIAEIALQAAL 1034
++ + N +++ K + E + + L
Sbjct: 104 KIL-LQIRKENSPEKDGKVNLEEFQVWSNL 132
>SB_21457| Best HMM Match : efhand (HMM E-Value=1.7e-29)
Length = 420
Score = 35.5 bits (78), Expect = 0.23
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Query: 925 SKEDIVNKFEVLRNNPFQDRLFRVFSS---HDDGRFSFEDLLDLCSAMCPECPLEVKAAW 981
S ++ + L NP + L + + D+G F + L + + E E +
Sbjct: 308 SSSELAHVMRSLGQNPTEQELKDMIAEVDQDDNGEIDFPEFLQMVAKKIKETDTEEEIQD 367
Query: 982 AFKVFDLDDDNQISAKDICQIIDRL 1006
AFKVFD + D IS+ ++ ++ L
Sbjct: 368 AFKVFDKNGDGMISSSELKLVMSNL 392
>SB_3982| Best HMM Match : DUF1311 (HMM E-Value=2.2)
Length = 803
Score = 35.1 bits (77), Expect = 0.31
Identities = 18/76 (23%), Positives = 36/76 (47%)
Query: 207 SGSDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSSSTKWNLD 266
SG D + K DS F+D+ ++ TG+++ E +K + + D + + +
Sbjct: 18 SGLDAKNKTDSGCFVDDWDKTHAEKSPNASETGNTEIRETNSRKHSADSEDENGERCKKE 77
Query: 267 QSYSSLDASFDSGVRS 282
+ S+ +AS G R+
Sbjct: 78 LTCSTEEASNREGSRT 93
>SB_16004| Best HMM Match : efhand (HMM E-Value=1.7)
Length = 201
Score = 34.7 bits (76), Expect = 0.40
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 906 KKFYSINPDKLEADYQ----YRFSKEDIVNKFEVLRNNPFQDRLFRVFSSHDDGRFSFED 961
K++ +++P + DY+ K + K L+ NPF+ R+ +VFS + G +F+D
Sbjct: 32 KRYRALHPVLIPDDYKELETQPLLKMRHLLKLPELKENPFKCRICQVFSVNGSGALTFDD 91
Query: 962 LLDLCSAM 969
L++ S +
Sbjct: 92 FLNMMSVL 99
>SB_10626| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 32.3 bits (70), Expect = 2.2
Identities = 14/39 (35%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 975 LEVKAAWAFKVFDLDDDNQISAKDICQIIDRLTWT-GNN 1012
+E K WAF ++D++ D I+ +++ +I+D L T G+N
Sbjct: 1 MEQKLRWAFSIYDVNGDGFITKQEMFRIVDALYRTAGDN 39
>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
Length = 3037
Score = 31.9 bits (69), Expect = 2.8
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 368 VDCTTPTKRVSFIEIPEQTVKSHPL-EEQSIGGMFNSINAAKILKDQNRSNETTTNDKTI 426
V+ + F++ P+ ++ H L EE + + + +A K + ++ N
Sbjct: 158 VESADSENELDFVDKPQTSIPQHVLGEEHKLERVKSKRDALKRKTTRQAASSGNENKSAS 217
Query: 427 NIKMCSESEAKDTV-WPNIMKCKYYD 451
K+C + EA +V PNI +CK D
Sbjct: 218 ERKVCEQPEASSSVEMPNI-ECKVVD 242
>SB_5690| Best HMM Match : efhand (HMM E-Value=7.39998e-41)
Length = 153
Score = 31.5 bits (68), Expect = 3.8
Identities = 21/85 (24%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 925 SKEDIVNKFEVLRNNPFQDRLFRVFSSHD---DGRFSFEDLLDLCSAMCPECPLEVKAAW 981
S E++ + L NP + L ++ D +G FE+ L + E +
Sbjct: 18 SNEELEVVMKSLGQNPSDEELQQMIQEVDADGNGEVDFEEFLAMMKKQMQHRDAEAEMRE 77
Query: 982 AFKVFDLDDDNQISAKDICQIIDRL 1006
AF+VFD + D IS ++ ++ L
Sbjct: 78 AFRVFDRNGDGSISEWELRSVMASL 102
>SB_49079| Best HMM Match : DUF1393 (HMM E-Value=5.8)
Length = 299
Score = 31.5 bits (68), Expect = 3.8
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 910 SINPDKLEADYQYRFSKEDIVNKFEVLRNNPFQDRLFRVFSSHDDGRFSFEDLLDLC 966
S NPD D+ E+ V + V P Q+ F V S+ DD +S ED + +C
Sbjct: 84 SSNPDSPIVDFDLWSELEEEVLNYVVETVEPTQEMFF-VDSAEDDDLYSIEDQISVC 139
>SB_2375| Best HMM Match : Pentapeptide_2 (HMM E-Value=2.7)
Length = 521
Score = 31.5 bits (68), Expect = 3.8
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 16/240 (6%)
Query: 43 NVTSKHCETAEPESSTRNIDSTDNIAVKIFGLDLEICTKVNSESDSLPALSLENSSATVE 102
N TS + S N D++ + + + T NS SD+ + + + ++T +
Sbjct: 167 NSTSDNSNPDNLTSDNSNTDNSGSDNSSSGNFNSDNSTSDNSTSDNSNSDNSTSDNSTSD 226
Query: 103 HSLLQDKSSGTDAHGSSENSRTETFKQPVFITSTMENSNNAVDSVPLFRDVRLPENVFKL 162
+S +S TD + +S+NS+ + P S +NS++A +S P D +N
Sbjct: 227 NS--NSDNSYTD-NSTSDNSKKDN-SNP--NNSNTDNSSSADNSNP---DNSNSDN--SN 275
Query: 163 PISELSFNGTIKHVQKLKPIVDPMSALSSNTGLNLYDRNSGSCHSGSDQEAKQDSKSFID 222
+ S N + + D ++ +SN + D NS S +S D DSK
Sbjct: 276 TDNSNSDNSSSDNSNSDNSNTDNSTSNNSNPENSTSD-NSNSNNSNQDNSNSDDSKPDNS 334
Query: 223 EKSTCELSRTYKTESTGD-SQYEELTC---KKDAEPANDSSSTKWNLDQSYSSLDASFDS 278
+ + ST D S + LT D +++SSS +N D S S S +S
Sbjct: 335 NTNNSNSDNSNSDNSTSDNSNPDNLTSDNPNTDNSGSDNSSSGNFNSDNSTSDNSNSDNS 394
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 31.1 bits (67), Expect = 5.0
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 777 RTVEDCFEEEQTKLTNQANNKLTGYISAVAYQQMRARQQAGALTSRIKENTCSDASFRQD 836
+ +E EEE+ L ++A K S++ Y+Q R R+ G R++E+ S +
Sbjct: 834 KDIERGIEEEKNILMSEARRKEHALHSSLEYEQQRCREM-GEQVDRLREDLNKLQSAHES 892
Query: 837 QPKSCSQNVLQ 847
+ SQ L+
Sbjct: 893 LTNNASQGQLE 903
>SB_36894| Best HMM Match : PXA (HMM E-Value=2.5e-13)
Length = 1252
Score = 31.1 bits (67), Expect = 5.0
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 10/103 (9%)
Query: 818 ALTSRIKENTCSDASFRQDQPKSCSQNVLQDKLVNVDANSNSSGTSLFDKSGIPLYKSNS 877
A T +KE + + Q P ++ K + DAN +S +P K N
Sbjct: 1138 ASTGCLKEKLENSTFWDQSPPSDLGSSLASCKSDDEDANYRAS-------LHLPFSKKNL 1190
Query: 878 MPSFEEAA-KMRARRQISFDNVDFPKSLMKKFYSIN--PDKLE 917
++ A+ KM+ R+ S +NV K MK F +N DKL+
Sbjct: 1191 DQKWKSASDKMKERKSKSVENVAAAKDKMKAFKGVNFTMDKLK 1233
>SB_41836| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.5e-07)
Length = 1128
Score = 30.7 bits (66), Expect = 6.6
Identities = 35/145 (24%), Positives = 69/145 (47%), Gaps = 14/145 (9%)
Query: 187 SALSSNTGLNLYDRNSGSCHSGSDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEEL 246
SAL ++S + +Q ++ KS DEK +++ + + D+++E
Sbjct: 39 SALDETMAELQSQQDSATSEMSGEQSRDENEKSNDDEKLNGDINGQEEEANNDDTEHERN 98
Query: 247 TCKKDAEPANDSSSTKWNLDQSYSSLDASFDSGVRSPDMFSXXXXXXEGKKLISESEPFW 306
+ EPAN SS N D S D + +GV SP S E + ++++++
Sbjct: 99 LIQ---EPAN--SSEPQNEDPSSEDKDFAIANGV-SP---SLSASPSEDESIVNDNKDKS 149
Query: 307 NFLKDYEI----YDNMRVKKIEEKL 327
+ +K+ +I DN+ +++IE++L
Sbjct: 150 STVKEDKITTENNDNL-LERIEQEL 173
>SB_39543| Best HMM Match : efhand (HMM E-Value=0.00063)
Length = 54
Score = 30.7 bits (66), Expect = 6.6
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 975 LEVKAAWAFKVFDLDDDNQISAKDICQII 1003
LE K WAF ++DLD + IS ++ +I+
Sbjct: 25 LEQKLKWAFSMYDLDGNGYISRGEMLEIV 53
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 30.7 bits (66), Expect = 6.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 573 RLLLESDAVIRSQPSRETLKRALFISPENR 602
RL+ + DA+I QP +TL+R L PE +
Sbjct: 733 RLIRDPDAIINDQPESQTLQRNLPAKPEKK 762
>SB_35537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 206
Score = 30.7 bits (66), Expect = 6.6
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 360 GTKVNSPEVDCTTPTKRVSFIEIPEQTVKSHPLEEQSIGGMF 401
G + + + C TKR + +++ + ++ HP+ +Q +G F
Sbjct: 6 GRRTKTLDCSCDRSTKRAAVLKVSQDLLRVHPVVDQHLGSNF 47
>SB_50111| Best HMM Match : GCC2_GCC3 (HMM E-Value=0)
Length = 1115
Score = 30.3 bits (65), Expect = 8.7
Identities = 19/84 (22%), Positives = 40/84 (47%), Gaps = 6/84 (7%)
Query: 944 RLFRVFSSHDDGRFSFEDLLDLCSAMCPECPLEVKAAWAFKVFDLDDDNQISAKDICQII 1003
++ + + G+ SF+D ++ + + + + AF++FD DD +IS +++ ++
Sbjct: 69 KIMKDYDRESTGKISFDDFNEVMTDWMLDRDPQEEVFKAFRLFDDDDSGKISLRNLRRVA 128
Query: 1004 DRLTWTGNNRSNFLDRESKAKIAE 1027
L N D E +A I E
Sbjct: 129 REL------GENMTDEELRAMIDE 146
>SB_48962| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2225
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/78 (23%), Positives = 32/78 (41%), Gaps = 3/78 (3%)
Query: 441 WPNIMKCKYYDVYYNRTKYSEKYELLALKYGERMAQAKSPGRRLSHLARRRQAFCSAATI 500
W + K++ V R + + L YG+ A KSPGR + A +
Sbjct: 1846 WSPVNDGKWHHVAVER---QGNHATVTLDYGKHQASGKSPGRMRILNLDGNSIYFGAKVL 1902
Query: 501 NEKAQASTAKMVLIDKNF 518
N + + S + V+++ F
Sbjct: 1903 NSRIKRSEGQGVIVENGF 1920
>SB_36447| Best HMM Match : Trp_repressor (HMM E-Value=2.5)
Length = 228
Score = 30.3 bits (65), Expect = 8.7
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 622 RALFGSPERYAESKSCDGSQSDMFLKRKLSALDEEP-------ASSRSKIAKSLSFGGDS 674
+A+F + + +K+CD + LK ++ AL + +S+ I KSL GDS
Sbjct: 19 QAVFHAISKCCHTKACDYRNEFLTLKTQVEALTNQTDTMALRVENSQIYIRKSLDIFGDS 78
Query: 675 IENLQSIG 682
I+ + IG
Sbjct: 79 IDTINRIG 86
>SB_31447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 30.3 bits (65), Expect = 8.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 205 CHSGSDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPA 255
CH G D+ K K+F + + T + E D + E ++ K++ E A
Sbjct: 106 CHRGRDKTTKYLKKAFTPTREITGILSTVQEEGNNDDKVESVSNKEEEELA 156
>SB_50760| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 30.3 bits (65), Expect = 8.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 918 ADYQYRFSKEDIVNKFEVLRNNPFQDRLFRVFSSHDDGRFSFEDL 962
+D+Q RFS++ IVN R + FQDR R SF DL
Sbjct: 29 SDFQNRFSEDKIVNTRRRERFSDFQDRSSEERIGFTKTRTSFRDL 73
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.127 0.359
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,319,439
Number of Sequences: 59808
Number of extensions: 1278662
Number of successful extensions: 2837
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2813
Number of HSP's gapped (non-prelim): 34
length of query: 1073
length of database: 16,821,457
effective HSP length: 90
effective length of query: 983
effective length of database: 11,438,737
effective search space: 11244278471
effective search space used: 11244278471
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 65 (30.3 bits)
- SilkBase 1999-2023 -