Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001956-TA|BGIBMGA001956-PA|IPR002048|Calcium-binding
EF-hand
         (1073 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    27   0.62 
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    25   2.5  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    25   3.3  
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    25   3.3  
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    25   3.3  
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    25   3.3  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    25   3.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   3.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   4.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    24   5.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    24   7.6  

>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 0.62
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 209 SDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSS-STKWNLDQ 267
           S+ E K   K  I   S    SR+++  S+  S+YE+L  +      ND   S   +  +
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSR 259

Query: 268 SYSSLDASFD 277
            Y   D  +D
Sbjct: 260 EYKKKDRRYD 269


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 2.5
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 209 SDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSS-STKWNLDQ 267
           S+ E K   K  I   S    SR+++  S+  S+YE+   +      ND   S   +  +
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRSR 259

Query: 268 SYSSLDASFD 277
            Y   D  +D
Sbjct: 260 EYKKKDRRYD 269


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 776 GRTVEDCFEEEQTKLTNQANNKLTGYI--SAVAYQQMRARQQAGALTSRI 823
           G T+   FE +  ++ N A +K  G    S   Y  ++A   +G+  S I
Sbjct: 191 GNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNI 240


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 209 SDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSS-STKWNLDQ 267
           S+ E K   K  I   S    SR+++  S+  S+YE+   +      ND   S   +  +
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259

Query: 268 SYSSLDASFD 277
            Y   D  +D
Sbjct: 260 EYKKKDRRYD 269


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 209 SDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSS-STKWNLDQ 267
           S+ E K   K  I   S    SR+++  S+  S+YE+   +      ND   S   +  +
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259

Query: 268 SYSSLDASFD 277
            Y   D  +D
Sbjct: 260 EYKKKDRRYD 269


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 209 SDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSS-STKWNLDQ 267
           S+ E K   K  I   S    SR+++  S+  S+YE+   +      ND   S   +  +
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259

Query: 268 SYSSLDASFD 277
            Y   D  +D
Sbjct: 260 EYKKKDRRYD 269


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 209 SDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSS-STKWNLDQ 267
           S+ E K   K  I   S    SR+++  S+  S+YE+   +      ND   S   +  +
Sbjct: 200 SENETKTCKKYAISSNSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259

Query: 268 SYSSLDASFD 277
            Y   D  +D
Sbjct: 260 EYKKKDRRYD 269


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 3.3
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)

Query: 209 SDQEAKQDSKSFIDEKSTCELSRTYKTESTGDSQYEELTCKKDAEPANDSS-STKWNLDQ 267
           S+ E K   K  I   S    SR+++  S+  S+YE+   +      ND   S   +  +
Sbjct: 200 SENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSR 259

Query: 268 SYSSLDASFD 277
            Y   D  +D
Sbjct: 260 EYKKKDRRYD 269


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 4.3
 Identities = 24/119 (20%), Positives = 45/119 (37%), Gaps = 8/119 (6%)

Query: 108 DKSSGTDAHGSSENSRTETFKQPVFITSTMENSNNAVDSVPLFRDVRLPENVFKLPISEL 167
           +++S      +S  +  E+FK P    S +   N  ++ + + +      ++     S+ 
Sbjct: 615 NQTSSASRENTSNTTSMESFKPPTLTESLLNRHNEDMEKLMMLKHREFRSSI---KASDK 671

Query: 168 SFNGTIKHVQKLKPIVDPMSALSSNTGLNLYDRNSGSCHSGSDQEAKQDSKSFIDEKST 226
             +  IK  +KL    DP +    N    +  + SGS HS      K      +   ST
Sbjct: 672 LKDSRIKTTEKLS--TDPNTHFQVNQSHGI--KRSGS-HSWEGDSFKVSKHEEVSRTST 725


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
            monooxygenase protein.
          Length = 548

 Score = 24.2 bits (50), Expect = 5.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 987  DLDDDNQISAKDICQIIDRLTWTGNNRSNFLDRESKAKIAEIALQ 1031
            DLD D+ +  K     +D L   G N     D+E K ++  I  +
Sbjct: 304  DLDIDDDVGEKKRQAFLDLLIEAGQNGVLLTDKEVKEQVDTIMFE 348


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)

Query: 985  VFDLDDDNQISAKDICQIIDRLTWTGN 1011
            +F  D +NQ +A D  Q+IDR  W  N
Sbjct: 315  MFIADLNNQSTASDFKQLIDR--WVAN 339


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.127    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 280,398
Number of Sequences: 429
Number of extensions: 11721
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 11
length of query: 1073
length of database: 140,377
effective HSP length: 65
effective length of query: 1008
effective length of database: 112,492
effective search space: 113391936
effective search space used: 113391936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 49 (23.8 bits)