GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001956-TA|BGIBMGA001956-PA|IPR002048|Calcium-binding
EF-hand
         (1073 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       26   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      24   4.8  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    24   4.8  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 25.8 bits (54), Expect = 1.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 132 FITSTMENSNNAVDSVPLFRDVRLPEN 158
           FI++T +NS  A D  P    +R PE+
Sbjct: 268 FISNTWQNSLRAADIQPTLSSIRHPES 294


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 95  ENSSATVEHSLLQDKSSGTDAHGSSENSRTETFKQPVFITSTMENSNNAVDS 146
           ++  +T E  + +D+  G D   SSEN  TE     + +T + E S  +  S
Sbjct: 10  DDLGSTDEVKVFKDEGDGEDEKRSSEN-LTEEKSSLIDLTESEEKSGGSYSS 60


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 849 KLVNVDANSNSSGTSLFD-KSGIP-LYKSNSMPSFEEAAKMRARRQISFDNVDFPKSLMK 906
           +++N   N  + G+ +F+  S I  +   N   S+ +  +  +R +++ DN    KSL +
Sbjct: 251 RILNSGYNLTTFGSFIFNANSAIEGIIFFNLAKSWPQLIEKWSRVEMALDNWKNDKSLKR 310

Query: 907 KFY 909
           KFY
Sbjct: 311 KFY 313


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.127    0.359 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,963
Number of Sequences: 317
Number of extensions: 8909
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 3
length of query: 1073
length of database: 114,650
effective HSP length: 64
effective length of query: 1009
effective length of database: 94,362
effective search space: 95211258
effective search space used: 95211258
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 48 (23.4 bits)