Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001955-TA|BGIBMGA001955-PA|IPR007757|MT-A70
(158 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual 90 2e-19
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 29 0.33
SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces... 27 1.3
SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces pomb... 26 2.3
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 25 4.1
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 25 4.1
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 25 5.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 25 7.1
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 25 7.1
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 24 9.4
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc... 24 9.4
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc... 24 9.4
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun... 24 9.4
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 24 9.4
>SPAC22G7.07c |||mRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 413
Score = 89.8 bits (213), Expect = 2e-19
Identities = 53/159 (33%), Positives = 79/159 (49%), Gaps = 11/159 (6%)
Query: 7 IAAIPLSNLLSSNCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVDLSPICP 66
+ A+P+ LS +VAVWCTN + VK ++F+ W + V++W WLK+ P+
Sbjct: 257 LKALPIQESLSKTGVVAVWCTNKEKYVNFVKKVLFKKWNLTLVSTWTWLKITAFGEPLFD 316
Query: 67 FGTGSTKQPYEMLIIGKVGSVA-----PIPDGQLIVSIPSALHSHKPPLLDLLKPYIN-- 119
+ ++P+E L+IG IP I+ IP HS KP L + + N
Sbjct: 317 V-YSNMRKPWEQLLIGVTSEYTSVYSDKIPPTFTIIGIPD-YHSRKPSLKPFISRWFNCS 374
Query: 120 -KEQPRILELFARYLLPNTTSVGYEPLKWQHISLYETVD 157
E +LE+F R L PN + G EPL + H LY + D
Sbjct: 375 ANESLPVLEIFGRSLTPNWITWGREPLLFMH-ELYWSSD 412
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 29.1 bits (62), Expect = 0.33
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 72 TKQPYEMLII--GKVGSVAPIPDGQLIVSIPSAL 103
TK PYE+ + G + +A +PDGQ+IVS +L
Sbjct: 108 TKGPYELTVKENGCIIFIAALPDGQIIVSSKHSL 141
>SPAC2F3.09 |hem1||5-aminolevulinate synthase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 558
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 11 PLSNLLSSNCLVAVWCTNSPANIQAVKNL 39
PL++L N V VWC+N N+ K +
Sbjct: 165 PLAHLADPNTRVEVWCSNDYLNMGGHKKI 193
>SPAC1002.03c |gls2||glucosidase II Gls2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 923
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 128 LFARYLLPNTTSVGYEPLKWQHIS 151
L R LLP S+GY +W ++S
Sbjct: 364 LVGRPLLPPLFSIGYHQCRWNYVS 387
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 25.4 bits (53), Expect = 4.1
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Query: 56 KVAVDLSPI-CPFGTGSTKQPYEMLIIGKVGSVAPIPDGQLIVSIPSALHSHKPP 109
+ A ++P+ PF S+ QP M V ++ P P + + A+ S PP
Sbjct: 875 RAAPSMAPVRSPFPGASSAQPAAMSRTSSVSTLPPPPPTASMTASAPAIASPPPP 929
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
Query: 87 VAPIPDGQLIVSIPSALHSHKPPLLDLLK 115
+ PI D + V +P HSH+PPL++L K
Sbjct: 1213 ICPICDYR--VEVPR--HSHRPPLIELQK 1237
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 25.0 bits (52), Expect = 5.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 53 HWLKVAVDLSPICPFGTGSTKQP 75
+W K+ + P+ GTG T P
Sbjct: 156 NWSKIVIAYEPVWAIGTGKTATP 178
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 24.6 bits (51), Expect = 7.1
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 83 KVGSVAPIPDGQLIVSIPSALHSHKPPLLDLLKP 116
K+G +P IVS + S K ++ +LKP
Sbjct: 1398 KLGEFSPFQSAYTIVSADKSSKSRKKLIMQILKP 1431
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 24.6 bits (51), Expect = 7.1
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 108 PPLLDLLKPYINKEQPRILE----LFARYLLPNTTSVGYEPL 145
PPL+DL+K I + +L+ LF R L T+S PL
Sbjct: 1469 PPLIDLVKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 104 HSHKPPLLDLLKPYINKEQPRILELFARYLLPNTTS 139
H P L+L K Y + Q +L +FA+YL N S
Sbjct: 912 HKLYPRALELYK-YDKEAQKEVLIIFAQYLRENGKS 946
>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 899
Score = 24.2 bits (50), Expect = 9.4
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 59 VDLSPICPFGTGSTKQPYEMLIIGKVGSVAPIPDG-QLIVSIPSAL 103
+ ++ I G K EML IG +VA IP+G +IV++ AL
Sbjct: 254 IGIAVIVLVGFFQGKNWLEMLTIGVSLAVAAIPEGLPIIVTVTLAL 299
>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 636
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 127 ELFARYLLPNTTSVGYEPLK 146
E ++RYL+ GYEP++
Sbjct: 570 EYYSRYLMDRKNESGYEPIE 589
>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1165
Score = 24.2 bits (50), Expect = 9.4
Identities = 8/27 (29%), Positives = 17/27 (62%)
Query: 118 INKEQPRILELFARYLLPNTTSVGYEP 144
+N+E ++ ++ R + P+TT + EP
Sbjct: 664 VNEENDSLISVYERDITPDTTHLEIEP 690
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 24.2 bits (50), Expect = 9.4
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 90 IPDGQLIVSIPSALHSHKPPLLDLLKPYIN-KEQPRILELFARYL 133
I GQL + +P+ H + P + PYI Q ++ RYL
Sbjct: 12 ISSGQLYIKLPTFFHLYVWPFALFVYPYIGYVYQNKLYSEEVRYL 56
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.137 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 813,600
Number of Sequences: 5004
Number of extensions: 34479
Number of successful extensions: 94
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 85
Number of HSP's gapped (non-prelim): 14
length of query: 158
length of database: 2,362,478
effective HSP length: 67
effective length of query: 91
effective length of database: 2,027,210
effective search space: 184476110
effective search space used: 184476110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)
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