GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001955-TA|BGIBMGA001955-PA|IPR007757|MT-A70
         (158 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0034 - 5166987-5167010,5167596-5167659,5168071-5168174,516...    38   0.003
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    29   1.7  
04_04_1017 - 30144844-30144855,30145163-30145228,30145383-301454...    28   3.0  
04_04_1010 - 30084141-30084152,30084460-30084525,30084680-300847...    28   3.0  
06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066     27   5.3  
03_02_0050 + 5272471-5274861                                           27   9.3  

>03_02_0034 -
           5166987-5167010,5167596-5167659,5168071-5168174,
           5168685-5168829,5168914-5169055,5169432-5169751,
           5169895-5170196,5170603-5170647,5171218-5171268,
           5171374-5171460,5171587-5171764,5172453-5172528,
           5173018-5173234,5173604-5173909
          Length = 686

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)

Query: 4   NEDIAAIPLSNLLS-SNCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVDLS 62
           N     +P+  L   +  L+ +W TN     + V+  +F  WGV+    ++WLKV  D S
Sbjct: 206 NRHFLYLPVQELAHPAGALLVLWITNREKLWKFVEEELFPAWGVKDHTVFYWLKVKPDGS 265

Query: 63  PICPFGTGSTKQPYEMLIIGKV 84
            I         +PYE L++G +
Sbjct: 266 LIGNLDL-LHHRPYECLLVGYI 286


>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 6/118 (5%)

Query: 46  VRYVASWHWLK-VAVDLSPICPFGTGSTKQPYEML----IIGKVGSVAPIPDGQLIVSIP 100
           VR VAS H+   VA + SP  P  +    +  +++    I+G +  V P+   QL  SI 
Sbjct: 25  VRQVASIHFKNFVAKNWSPNDPEESQKISESDKLMVRENILGFIVQVPPLLRAQLGESIK 84

Query: 101 SALHSHKPPLLDLLKPYINKEQPRILELFARYLLPNTTSVGYE-PLKWQHISLYETVD 157
           + +HS  P    +L  ++        ++F    +    S  YE   + + I LY  V+
Sbjct: 85  TIIHSDYPEQWPVLLHWVTHNLESENQIFGALYVLRVLSRKYEFKSEEERIPLYHIVE 142


>04_04_1017 -
           30144844-30144855,30145163-30145228,30145383-30145431,
           30145594-30145661,30145764-30145809,30146114-30146207,
           30146290-30146352,30146532-30146654,30146761-30146794,
           30147050-30147175,30147328-30147384
          Length = 245

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 30  PANIQAVKNLIFRNW-GVRYVASWHWLKVAV 59
           PAN+Q ++ L F +W G+    SW+++ V V
Sbjct: 98  PANLQKLQYLAFASWLGIVLCLSWNFIAVIV 128


>04_04_1010 -
           30084141-30084152,30084460-30084525,30084680-30084728,
           30084891-30084958,30085061-30085106,30085411-30085504,
           30085587-30085649,30085829-30085951,30086058-30086091,
           30086347-30086472,30086625-30086681
          Length = 245

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 30  PANIQAVKNLIFRNW-GVRYVASWHWLKVAV 59
           PAN+Q ++ L F +W G+    SW+++ V V
Sbjct: 98  PANLQKLQYLAFASWLGIVLCLSWNFIAVIV 128


>06_03_0693 - 23572499-23572618,23572854-23572991,23573855-23575066
          Length = 489

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)

Query: 50  ASWHWLKVAVDLSPICPFGTGSTK 73
           A W W +VA+DL  + P+  G+TK
Sbjct: 321 ARWVW-RVAIDLEQVLPWPVGNTK 343


>03_02_0050 + 5272471-5274861
          Length = 796

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 89  PIPDGQLIVSIPSALHSHKPPLLDLLKPYINKEQPRILELFARYLLPNTTSVGYEPL 145
           PIP   L + +P    SH P +L L   +     P +L  + R+L P +      PL
Sbjct: 44  PIP-ALLALYLPRLAASHHPRVLSLAASHPGLASPDLLLAYRRHLSPPSCLPSLVPL 99


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,142,172
Number of Sequences: 37544
Number of extensions: 220765
Number of successful extensions: 409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 14,793,348
effective HSP length: 76
effective length of query: 82
effective length of database: 11,940,004
effective search space: 979080328
effective search space used: 979080328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)