GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001955-TA|BGIBMGA001955-PA|IPR007757|MT-A70
         (158 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY122180-1|AAM52692.1|  359|Drosophila melanogaster LD37858p pro...   117   6e-27
AE014297-2253|AAF55351.1|  359|Drosophila melanogaster CG14906-P...   117   6e-27
U31961-16|AAA84415.1|  335|Drosophila melanogaster protein ( Dro...    65   4e-11
X17551-2|CAA35587.1|  888|Drosophila melanogaster protein ( D.me...    29   3.8  
AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p pro...    29   3.8  

>AY122180-1|AAM52692.1|  359|Drosophila melanogaster LD37858p
           protein.
          Length = 359

 Score =  117 bits (282), Expect = 6e-27
 Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 10/164 (6%)

Query: 1   MMYNEDIAAIPLSNLLSSNCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVD 60
           M+ NE ++ IPLS L     LVA+WCTNS  +  A++  +  +W +R +    W K++ D
Sbjct: 183 MLSNEQLSHIPLSKLTHPRSLVAIWCTNSTLHQLALEQQLLPSWNLRLLHKLRWYKLSTD 242

Query: 61  LSPICPFGTGST-KQPYEMLIIGKVGSVA-----PIPDGQLIVSIPSALHSHKPPLLDLL 114
              I P  +  T KQPYEML +      +      I   +LI S+PS +HSHKPPLL  L
Sbjct: 243 HELIAPPQSDLTQKQPYEMLYVACRSDASENYGKDIQQTELIFSVPSIVHSHKPPLLSWL 302

Query: 115 KPY--INKEQ--PRILELFARYLLPNTTSVGYEPLKWQHISLYE 154
           + +  ++K+Q  P  LELFARYL P+ TS+G E LK     LYE
Sbjct: 303 REHLLLDKDQLEPNCLELFARYLHPHFTSIGLEVLKLMDERLYE 346


>AE014297-2253|AAF55351.1|  359|Drosophila melanogaster CG14906-PA
           protein.
          Length = 359

 Score =  117 bits (282), Expect = 6e-27
 Identities = 68/164 (41%), Positives = 94/164 (57%), Gaps = 10/164 (6%)

Query: 1   MMYNEDIAAIPLSNLLSSNCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVD 60
           M+ NE ++ IPLS L     LVA+WCTNS  +  A++  +  +W +R +    W K++ D
Sbjct: 183 MLSNEQLSHIPLSKLTHPRSLVAIWCTNSTLHQLALEQQLLPSWNLRLLHKLRWYKLSTD 242

Query: 61  LSPICPFGTGST-KQPYEMLIIGKVGSVA-----PIPDGQLIVSIPSALHSHKPPLLDLL 114
              I P  +  T KQPYEML +      +      I   +LI S+PS +HSHKPPLL  L
Sbjct: 243 HELIAPPQSDLTQKQPYEMLYVACRSDASENYGKDIQQTELIFSVPSIVHSHKPPLLSWL 302

Query: 115 KPY--INKEQ--PRILELFARYLLPNTTSVGYEPLKWQHISLYE 154
           + +  ++K+Q  P  LELFARYL P+ TS+G E LK     LYE
Sbjct: 303 REHLLLDKDQLEPNCLELFARYLHPHFTSIGLEVLKLMDERLYE 346


>U31961-16|AAA84415.1|  335|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 335

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 32/82 (39%), Positives = 47/82 (57%), Gaps = 1/82 (1%)

Query: 1   MMYNEDIAAIPLSNLLSSNCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVD 60
           M+ NE ++ IPLS L     LVA+WCTNS  +  A++  +  +W +R +    W K++ D
Sbjct: 218 MLSNEQLSHIPLSKLTHPRSLVAIWCTNSTLHQLALEQQLLPSWNLRLLHKLRWYKLSTD 277

Query: 61  LSPICPFGTGST-KQPYEMLII 81
              I P  +  T KQPYEML +
Sbjct: 278 HELIAPPQSDLTQKQPYEMLYV 299


>X17551-2|CAA35587.1|  888|Drosophila melanogaster protein (
           D.melanogaster white-one mutant DNA with Doc retroposon,
           inserted inwhite locuspromoter region.  ).
          Length = 888

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 94  QLIVSIPSALHSHKPPLLDLLKPYINKEQPRILELFARYLLPNTTSVGYEPLKWQ 148
           +L   I   L+  K P  DL+ P +  E P+   L    L      +GY P KW+
Sbjct: 435 ELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWK 489


>AY047531-1|AAK77263.1|  888|Drosophila melanogaster GH03753p
           protein.
          Length = 888

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 17/55 (30%), Positives = 24/55 (43%)

Query: 94  QLIVSIPSALHSHKPPLLDLLKPYINKEQPRILELFARYLLPNTTSVGYEPLKWQ 148
           +L   I   L+  K P  DL+ P +  E P+   L    L      +GY P KW+
Sbjct: 435 ELAKVIKEQLNPRKSPGYDLITPRMLIELPKCAILHICLLFNAIAKLGYFPQKWK 489


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.321    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,536,214
Number of Sequences: 52641
Number of extensions: 362881
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 5
length of query: 158
length of database: 24,830,863
effective HSP length: 79
effective length of query: 79
effective length of database: 20,672,224
effective search space: 1633105696
effective search space used: 1633105696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)