GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001955-TA|BGIBMGA001955-PA|IPR007757|MT-A70
         (158 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical p...    98   2e-21
Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical pr...    30   0.88 
DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin p...    30   0.88 
AL032654-3|CAE54915.1|  101|Caenorhabditis elegans Hypothetical ...    29   1.5  
AL032654-2|CAA21718.1|  257|Caenorhabditis elegans Hypothetical ...    29   1.5  
U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam ...    29   2.0  
U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam ...    29   2.0  
U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam ...    29   2.0  
AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine re...    27   6.2  
Z74039-5|CAA98504.1|  479|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U28944-13|AAA68372.1|  365|Caenorhabditis elegans Hypothetical
           protein C18A3.1 protein.
          Length = 365

 Score = 98.3 bits (234), Expect = 2e-21
 Identities = 57/154 (37%), Positives = 84/154 (54%), Gaps = 7/154 (4%)

Query: 2   MYNEDIAAIPLSNLLSSNCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVDL 61
           M  E +  + +  +L+ + L+A W TN    I+      F  WG+  VA+W  LK+    
Sbjct: 207 MDEEVLDCLDIPVILTHDALIAFWITNR-IGIEEEMIERFDKWGMEVVATWKLLKITTQG 265

Query: 62  SPICPFGTGSTKQPYEMLIIGKVGSVA---PIPDGQLIVSIPSALHSHKPPLLDLLKPYI 118
            P+  F     K P+E L++ K         +P+  +  S+P ++HSHKPPLLDLL+ + 
Sbjct: 266 DPVYDFDNQKHKVPFESLMLAKKKDSMRKFELPENFVFASVPMSVHSHKPPLLDLLR-HF 324

Query: 119 NKEQPRILELFARYLLPNTTSVGYEP--LKWQHI 150
             E    LELFAR LLP+T SVGYEP  L+ +H+
Sbjct: 325 GIEFTEPLELFARSLLPSTHSVGYEPFLLQSEHV 358


>Z32840-1|CAA83679.1|  584|Caenorhabditis elegans Hypothetical
           protein C07G2.1a protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 72  TKQPYEMLIIGKVGSVAPIPDGQLIVSIPSALHSHKPPLLDLLKPYINKE---------- 121
           T  PY       VG    + +      +P+    ++P +++   PY+ +           
Sbjct: 348 TTAPYVEETTTTVGYKPEVEETTTEAEVPTTTVGYEPEIVETTAPYVEETTTAADVPSTT 407

Query: 122 ---QPRILELFARYLLPNTTSVGYEP 144
              +P ++E      +P TT+VGYEP
Sbjct: 408 AVYEPEVVETTTEAEVPTTTTVGYEP 433



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 122 QPRILELFARYLLPNTTSVGYEP 144
           +P ++E  A Y+   TT+VGY+P
Sbjct: 342 EPEVVETTAPYVEETTTTVGYKP 364


>DQ340623-1|ABC65811.1|  584|Caenorhabditis elegans chondroitin
           proteoglycan-1 protein.
          Length = 584

 Score = 29.9 bits (64), Expect = 0.88
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 72  TKQPYEMLIIGKVGSVAPIPDGQLIVSIPSALHSHKPPLLDLLKPYINKE---------- 121
           T  PY       VG    + +      +P+    ++P +++   PY+ +           
Sbjct: 348 TTAPYVEETTTTVGYKPEVEETTTEAEVPTTTVGYEPEIVETTAPYVEETTTAADVPSTT 407

Query: 122 ---QPRILELFARYLLPNTTSVGYEP 144
              +P ++E      +P TT+VGYEP
Sbjct: 408 AVYEPEVVETTTEAEVPTTTTVGYEP 433



 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)

Query: 122 QPRILELFARYLLPNTTSVGYEP 144
           +P ++E  A Y+   TT+VGY+P
Sbjct: 342 EPEVVETTAPYVEETTTTVGYKP 364


>AL032654-3|CAE54915.1|  101|Caenorhabditis elegans Hypothetical
           protein Y52B11A.2b protein.
          Length = 101

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 95  LIVSIPSALHSHKPPLLDLLKPYINKEQPRIL 126
           + +++P    S  PP+ +L  PY+ +EQ  +L
Sbjct: 40  MTINLPEDYPSISPPIFELSGPYLRREQKEVL 71


>AL032654-2|CAA21718.1|  257|Caenorhabditis elegans Hypothetical
           protein Y52B11A.2a protein.
          Length = 257

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/32 (31%), Positives = 19/32 (59%)

Query: 95  LIVSIPSALHSHKPPLLDLLKPYINKEQPRIL 126
           + +++P    S  PP+ +L  PY+ +EQ  +L
Sbjct: 40  MTINLPEDYPSISPPIFELSGPYLRREQKEVL 71


>U49830-6|AAK31481.1|  964|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform a protein.
          Length = 964

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 91  PDGQLIVSIPSALHSHKPPLLDLLKPYINKEQPRI 125
           P  +LI S P  ++S  PP LD  +P I  E P++
Sbjct: 98  PFFRLISSTPKLVNSTFPPKLDSTQPQIFPEDPKV 132


>U49830-5|AAK31482.1| 1227|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform b protein.
          Length = 1227

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 91  PDGQLIVSIPSALHSHKPPLLDLLKPYINKEQPRI 125
           P  +LI S P  ++S  PP LD  +P I  E P++
Sbjct: 361 PFFRLISSTPKLVNSTFPPKLDSTQPQIFPEDPKV 395


>U49830-4|AAU20850.1| 1196|Caenorhabditis elegans Neuronal igcam
           protein 6, isoform d protein.
          Length = 1196

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 91  PDGQLIVSIPSALHSHKPPLLDLLKPYINKEQPRI 125
           P  +LI S P  ++S  PP LD  +P I  E P++
Sbjct: 330 PFFRLISSTPKLVNSTFPPKLDSTQPQIFPEDPKV 364


>AF016444-1|AAN73876.2|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 9 protein.
          Length = 330

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 67  FGTGSTKQPYEMLIIGKVGSVAPIPDGQLIVSIPSALHSHKPPLLDLLKPYINKEQPRIL 126
           FG G  K  Y  L+  ++ +  P+     IV +    H +K  L   L+ ++N +Q    
Sbjct: 265 FGVGFEKSTYISLV--ELNASYPLYAVVSIVVLLKKAHLNKVRLKKSLQNHVNADQNEYF 322

Query: 127 ELFARYL 133
           E F R+L
Sbjct: 323 ENFNRFL 329


>Z74039-5|CAA98504.1|  479|Caenorhabditis elegans Hypothetical
           protein K03B8.5 protein.
          Length = 479

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 97  VSIPSALHSHKPPLLDLLKPYINKEQPRILELFARYLLPNTTSVGY 142
           ++ P    + KPP  ++ K   +   P I+EL++R  LP+  +  Y
Sbjct: 427 ITSPVVCCTDKPPYKNVFK---SSHNPTIIELYSRTTLPSAVTFKY 469


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,248,305
Number of Sequences: 27539
Number of extensions: 176997
Number of successful extensions: 353
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 12
length of query: 158
length of database: 12,573,161
effective HSP length: 76
effective length of query: 82
effective length of database: 10,480,197
effective search space: 859376154
effective search space used: 859376154
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)