GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001955-TA|BGIBMGA001955-PA|IPR007757|MT-A70
         (158 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.83 
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   1.4  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   1.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   1.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   1.4  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   1.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 0.83
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 82   GKVGSVAPIPDGQLIVSIPSALHSHKPPLLDL 113
            G+VG V P      I  I S LH + P  + L
Sbjct: 978  GRVGFVTPFEHRHFISGIDSNLHVYAPLKISL 1009


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 54  WLKVAVDLSPICPFGTGSTKQPYE 77
           W  V V   P+   GTG T  P +
Sbjct: 156 WDNVVVAYEPVWAIGTGKTATPQQ 179


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 12  LSNLLSSNCLVAVWCTNSPAN 32
           LS+L S  CLV  W  +   N
Sbjct: 188 LSSLFSKGCLVGTWSPDPAIN 208


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 12  LSNLLSSNCLVAVWCTNSPAN 32
           LS+L S  CLV  W  +   N
Sbjct: 188 LSSLFSKGCLVGTWSPDPAIN 208


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 12  LSNLLSSNCLVAVWCTNSPAN 32
           LS+L S  CLV  W  +   N
Sbjct: 188 LSSLFSKGCLVGTWSPDPAIN 208


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 76  YEMLIIGKVGSVAPIPDGQLIVSIPSALHSHKPP 109
           Y    +  + +V  +PD  +  S    +H+ KPP
Sbjct: 218 YAQKHVKSIRAVTKLPDTSMAKSFVRKVHATKPP 251


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.137    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,336
Number of Sequences: 429
Number of extensions: 2483
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 158
length of database: 140,377
effective HSP length: 53
effective length of query: 105
effective length of database: 117,640
effective search space: 12352200
effective search space used: 12352200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)