Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001955-TA|BGIBMGA001955-PA|IPR007757|MT-A70
(158 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19340.1 68414.m02404 methyltransferase MT-A70 family protein... 85 2e-17
At5g10330.1 68418.m01198 histidinol-phosphate aminotransferase, ... 34 0.051
At1g71920.1 68414.m08314 histidinol-phosphate aminotransferase, ... 34 0.051
At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containi... 30 0.63
At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein bet... 29 1.5
At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein bet... 29 1.5
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 3.4
At5g17760.2 68418.m02083 AAA-type ATPase family protein contains... 27 5.9
At5g17760.1 68418.m02082 AAA-type ATPase family protein contains... 27 5.9
At5g47010.1 68418.m05794 RNA helicase, putative similar to type ... 27 7.8
At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR... 27 7.8
>At1g19340.1 68414.m02404 methyltransferase MT-A70 family protein
contains Pfam profile PF05063: MT-A70
(S-adenosylmethionine-binding subunit of human mRNA:m6A
methyl-transferase (MTase))
Length = 414
Score = 85.4 bits (202), Expect = 2e-17
Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 14/157 (8%)
Query: 4 NEDIAAIPLSNLL-SSNCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVDLS 62
N+ ++P+ L + LVA+W TN + V+ +F WG++YVA+ +WLKV D +
Sbjct: 252 NQYFLSLPIKQLAHAEGALVALWVTNREKLLSFVEKELFPAWGIKYVATMYWLKVKPDGT 311
Query: 63 PICPFGTGSTKQPYEMLIIG----------KVGSVAPIPDGQLIVSIPSALHSHKPPLLD 112
IC K PYE L++G K + Q+I+SIP S KPP+ D
Sbjct: 312 LICDLDLVHHK-PYEYLLLGYHFTELAGSEKRSDFKLLDKNQIIMSIPGDF-SRKPPIGD 369
Query: 113 LLKPYINKEQP-RILELFARYLLPNTTSVGYEPLKWQ 148
+L + QP R LELFAR + TS G EPL +Q
Sbjct: 370 ILLKHTPGSQPARCLELFAREMAAGWTSWGNEPLHFQ 406
>At5g10330.1 68418.m01198 histidinol-phosphate aminotransferase,
putative similar to histidinol-phosphate
aminotransferase GB:CAA70403 [GI:335562] from [Nicotiana
tabacum], Nicotiana plumbaginifolia [GI:12055099]
Length = 417
Score = 33.9 bits (74), Expect = 0.051
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 73 KQPYEMLIIGKVGSVAPIPDGQLIVSIPSALHSHKPPLLDLLK--PYIN 119
KQPY + + G+V ++A + +G+ + + AL + L LLK P++N
Sbjct: 303 KQPYNVSVAGEVAALAALSNGKYLEDVRDALVRERERLFGLLKEVPFLN 351
>At1g71920.1 68414.m08314 histidinol-phosphate aminotransferase,
putative similar to histidinol-phosphate
aminotransferase GB:CAA70403 [GI:335562] from [Nicotiana
tabacum], Nicotiana plumbaginifolia [GI:12055099]
Length = 415
Score = 33.9 bits (74), Expect = 0.051
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 73 KQPYEMLIIGKVGSVAPIPDGQLIVSIPSALHSHKPPLLDLLK--PYIN 119
KQPY + + G+V ++A + +G+ + + AL + L LLK P++N
Sbjct: 301 KQPYNVSVAGEVAALAALSNGKYLEDVRDALVRERERLFGLLKEVPFLN 349
>At2g16880.1 68415.m01942 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 743
Score = 30.3 bits (65), Expect = 0.63
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Query: 91 PDGQLIVSIPSALHSHKPPLLDLLKPYINK-EQPRILELFARYLLPNTTSVGYEPLKWQH 149
P+ QL+ ++ S L S K L+ L PYI + QP + L + L +W
Sbjct: 7 PESQLLKTLTSILTSEKTHFLETLNPYIPQITQPLLTSLLSSPSLAKKPETLVSFFQWAQ 66
Query: 150 ISLYE 154
S+ E
Sbjct: 67 TSIPE 71
>At5g20950.2 68418.m02490 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
EMBL:AB017502
Length = 624
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 19 NCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVDL---------SPICPFGT 69
+ LVA W + Q V + +F ++G + W K L P+ PFG
Sbjct: 558 DALVAAWLPGTEG--QGVADALFGDYGFTGKLARTWFKSVKQLPMNVGDRHYDPLYPFGF 615
Query: 70 GSTKQPYEM 78
G T +PY+M
Sbjct: 616 GLTTKPYKM 624
>At5g20950.1 68418.m02489 glycosyl hydrolase family 3 protein
beta-D-glucan exohydrolase, Nicotiana tabacum,
EMBL:AB017502
Length = 624
Score = 29.1 bits (62), Expect = 1.5
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 11/69 (15%)
Query: 19 NCLVAVWCTNSPANIQAVKNLIFRNWGVRYVASWHWLKVAVDL---------SPICPFGT 69
+ LVA W + Q V + +F ++G + W K L P+ PFG
Sbjct: 558 DALVAAWLPGTEG--QGVADALFGDYGFTGKLARTWFKSVKQLPMNVGDRHYDPLYPFGF 615
Query: 70 GSTKQPYEM 78
G T +PY+M
Sbjct: 616 GLTTKPYKM 624
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 27.9 bits (59), Expect = 3.4
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 80 IIGKVGSVAPIPDGQLIVSIPSALHSHKPPLLDLLKPYINKEQPRILELFARYLLPNTTS 139
I K G V P D Q V P + P D+ KP +N+ +P+ +L A + P T
Sbjct: 37 IKAKNGGVFPRHDAQPKVDAPVEKPAKFYPAEDVKKPLVNRRKPKPTKLKAS-ITPGTVL 95
Query: 140 V 140
+
Sbjct: 96 I 96
>At5g17760.2 68418.m02083 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 341
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 106 HKPPLLDLLKPYINKEQPRILELFARYLLPNTTSVGYEPLKWQHISLYETVDM 158
HK +L+ PYI + I + +L + S+ +E + +H S +ET+ M
Sbjct: 171 HKDLILNSYVPYIESKAKEIRDERRILMLHSLNSLRWESVILEHPSTFETMAM 223
>At5g17760.1 68418.m02082 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 505
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 106 HKPPLLDLLKPYINKEQPRILELFARYLLPNTTSVGYEPLKWQHISLYETVDM 158
HK +L+ PYI + I + +L + S+ +E + +H S +ET+ M
Sbjct: 171 HKDLILNSYVPYIESKAKEIRDERRILMLHSLNSLRWESVILEHPSTFETMAM 223
>At5g47010.1 68418.m05794 RNA helicase, putative similar to type 1 RNA
helicase pNORF1 [Homo sapiens] GI:1885356
Length = 1254
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 63 PICPFGTGSTKQPYEMLIIGKVGSVAPIP 91
P+ PF G QPY + G VG+V P
Sbjct: 1003 PLSPFPGGPPSQPYAIPTRGPVGAVPHAP 1031
>At4g08450.1 68417.m01393 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1234
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 12 LSNLLSSNCLVAVWCTNSPANIQAVKNLIFRN-WGVRYVASWHWLKVAVDL 61
+S+ +S CL ++ P+N+ ++NL++ WG+ V W +KV L
Sbjct: 721 ISSNISELCLNSLAVEEFPSNLH-LENLVYLLIWGMTSVKLWDGVKVLTSL 770
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.321 0.137 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,127,840
Number of Sequences: 28952
Number of extensions: 175624
Number of successful extensions: 314
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 11
length of query: 158
length of database: 12,070,560
effective HSP length: 75
effective length of query: 83
effective length of database: 9,899,160
effective search space: 821630280
effective search space used: 821630280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -