Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001954-TA|BGIBMGA001954-PA|IPR004088|KH, type 1,
IPR004087|KH
         (311 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    56   5e-09
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        38   0.002
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    27   2.6  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   4.5  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 32/73 (43%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 229 QQDTSTQ-VTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA-EPLPGSNDRIITITGSPG 286
           QQ   TQ ++IP D+ G IIG+ GS+I +IR  SG+ I IA EP   + +R+ TITG+  
Sbjct: 317 QQPKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISIAKEPHDETGERMFTITGTHE 376

Query: 287 RIQMAQYLLQQSV 299
             + A +LL Q +
Sbjct: 377 ENEKALFLLYQQL 389



 Score = 38.7 bits (86), Expect = 0.001
 Identities = 15/41 (36%), Positives = 27/41 (65%)

Query: 243 AGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITG 283
           AG IIGKAG  + ++R+ +     + + +P  +DR++TI+G
Sbjct: 105 AGIIIGKAGKNVAELRSTTNVKAGVTKAVPNVHDRVLTISG 145



 Score = 29.1 bits (62), Expect = 0.85
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAE-SGAGIEIAEPLPGSNDRIITITGSPGRIQMA 291
           ++ I   L G+IIG+ G RI+ I+ + S   I   + LP S +R + I G+   +  A
Sbjct: 182 RLLIAHSLMGSIIGRNGLRIKLIQDKCSCRMIASKDMLPQSTERTVEIHGTVDNLHAA 239


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 235  QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQYL 294
            ++ +P+    +IIG+ GS  R I  ++   + I   L       ITI GSP   + A+ +
Sbjct: 1042 KIEVPQRCISSIIGRMGSTRRDIERKTSTMLNIPNVLDPEETVTITIVGSPENCEKAKEM 1101

Query: 295  LQQSV 299
            +Q+ V
Sbjct: 1102 IQEKV 1106



 Score = 33.1 bits (72), Expect = 0.052
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 238  IPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQYLLQQ 297
            IP +L   IIG  GS I KIR  +   I++    PG  D I+ + GS   +  A+ L+ +
Sbjct: 1214 IPTNLHRRIIGSGGSIINKIRKIAQVKIDVPR-TPG--DEIVVVQGSRAGVVKAKDLIFE 1270

Query: 298  SVHES 302
             + E+
Sbjct: 1271 RLQEN 1275



 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAE 269
           TST + IP      ++G+ GS +  IR +    I+I +
Sbjct: 884 TST-IDIPSKAVSRVVGRNGSTVENIRTQFDVKIDIGD 920


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/62 (22%), Positives = 29/62 (46%)

Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
           Q  S ++++P  L   +      ++ +I   + A I + E    SN++ I++ G+    Q
Sbjct: 262 QVVSQKMSVPSSLLDQLYHAMPHKLMEISQNTNANITVEESDSNSNEKFISVVGTSEANQ 321

Query: 290 MA 291
            A
Sbjct: 322 SA 323


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 47  VLDFDNSLKTGARLKIFSNSAPQSSERIVQLIGKPDSIVSGVREVLD-LVRQVPIKGPIQ 105
           + + DN++     L I  +S  ++ + I+  +G  + +   +  V D L R   I   IQ
Sbjct: 320 ISNIDNAVDNKILL-IAMSSGSEALDAILAQMGGTEKVEDVLENVNDTLARSEEIDATIQ 378

Query: 106 AYDPHNYD 113
            Y+P N D
Sbjct: 379 TYNPQNID 386


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.135    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 935,557
Number of Sequences: 5004
Number of extensions: 32437
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 43
Number of HSP's gapped (non-prelim): 12
length of query: 311
length of database: 2,362,478
effective HSP length: 73
effective length of query: 238
effective length of database: 1,997,186
effective search space: 475330268
effective search space used: 475330268
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)