Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001954-TA|BGIBMGA001954-PA|IPR004088|KH, type 1,
IPR004087|KH
(311 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0119 + 6978697-6979045,6979519-6979581,6979757-6979866,697... 56 3e-08
10_08_0493 + 18299885-18299892,18300201-18300837,18301254-183016... 50 2e-06
12_02_0998 + 25126114-25126596,25129213-25129339,25129349-251294... 50 3e-06
06_02_0257 - 13533689-13533714,13533799-13533925,13534013-135341... 48 1e-05
03_05_0388 + 23726957-23727418,23730016-23730262,23731072-237312... 48 1e-05
02_05_1263 + 35316083-35316185,35317167-35317220,35317665-353179... 48 1e-05
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 47 2e-05
01_01_0956 + 7505206-7505322,7505860-7506723,7506841-7507260,750... 46 5e-05
08_01_0080 + 566509-566746,566904-567151,567347-567532,567639-56... 44 1e-04
10_08_0948 + 21754985-21755290,21756042-21756297,21756845-217569... 44 2e-04
03_03_0131 - 14706123-14706171,14706364-14706422,14706504-147067... 41 0.001
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 40 0.003
07_03_0173 - 14721369-14721503,14722542-14722629,14723580-147237... 37 0.018
10_08_0511 + 18435745-18436499,18436624-18436742,18436788-184373... 36 0.032
04_04_1500 + 34010819-34011016,34013267-34013308,34014195-340142... 35 0.096
06_03_0766 - 24425486-24426245,24430766-24430855,24430951-244310... 33 0.22
02_01_0703 + 5251901-5251950,5252783-5253554 33 0.29
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 33 0.29
10_07_0195 + 13972656-13972970,13973518-13973848,13975312-139754... 32 0.51
10_07_0037 - 12239296-12239367,12239484-12239606,12239699-122397... 31 1.6
01_06_0028 - 25746250-25746526,25746839-25746975,25747089-257472... 29 3.6
04_04_1049 + 30414545-30414596,30414732-30414853,30415121-304151... 29 4.8
05_02_0021 - 5674587-5674799,5674898-5675031,5675129-5675207,567... 29 6.3
>02_02_0119 +
6978697-6979045,6979519-6979581,6979757-6979866,
6979969-6980154,6980266-6980361,6980493-6980564,
6980798-6980909,6982448-6982534,6982680-6983872
Length = 755
Score = 56.4 bits (130), Expect = 3e-08
Identities = 27/77 (35%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLPGSNDRIITITGSPG 286
Q TS + IP G IIGK+G I+ ++ +SGA I++ + LPGS R + ++G+P
Sbjct: 162 QGTSKTIEIPNGRVGVIIGKSGETIKNLQLQSGAKIQVTRDLDALPGSQTRPVELSGTPD 221
Query: 287 RIQMAQYLLQQSVHESN 303
+I A+ L+ + + E++
Sbjct: 222 QISRAEQLINEVLAEAD 238
Score = 37.9 bits (84), Expect = 0.010
Identities = 23/66 (34%), Positives = 40/66 (60%), Gaps = 6/66 (9%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPL---PG--SNDRIITITGSPGRIQ 289
Q+ I + G +IGK G I+ ++A+SGA I++ PL PG + +R + I G+ +I+
Sbjct: 261 QMKIANNKVGLVIGKGGETIKSMQAKSGARIQVV-PLHLPPGDPATERTVYIDGTQEQIE 319
Query: 290 MAQYLL 295
A+ L+
Sbjct: 320 TAKQLV 325
>10_08_0493 +
18299885-18299892,18300201-18300837,18301254-18301676,
18301769-18302014,18302124-18302789,18303228-18303283,
18303367-18303460,18303559-18303738
Length = 769
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQ 292
S + IP ++IG G + +IR SGA +++ E PGS++ I+ I G P +++ AQ
Sbjct: 684 SVEFRIPNSYLESVIGAGGVNLAEIRQISGARVKLHEAHPGSSESIVEIQGIPDQVKAAQ 743
Query: 293 YLLQQSVHESN 303
LLQ + S+
Sbjct: 744 SLLQGFIGASS 754
Score = 47.2 bits (107), Expect = 2e-05
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLPG---SNDRIITITGSP 285
D ++ +P + G ++GK GS I+++R ++GAGI + +E LP +D ++ I+GS
Sbjct: 161 DVIARILVPGNQVGCLLGKGGSIIQQLRNDTGAGIRVLPSENLPQCALKSDELVQISGSS 220
Query: 286 GRIQMAQYLLQQSVHE 301
++ A Y + +H+
Sbjct: 221 SLVRKALYEISTRLHQ 236
Score = 37.9 bits (84), Expect = 0.010
Identities = 14/51 (27%), Positives = 32/51 (62%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
+T ++ P G+++G+ G ++ +R + A I +A+ +PG+++R+I I
Sbjct: 52 ETIYRILCPVKKIGSVLGRGGDIVKALRDTTKAKIRVADSIPGADERVIII 102
Score = 32.7 bits (71), Expect = 0.39
Identities = 13/54 (24%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAE-PLPGSNDRIITIT 282
++ S ++ + G +IGK+G +R++ ++GA +++ E S +R+I ++
Sbjct: 300 EEFSIKILCASEHIGQVIGKSGGNVRQVEQQTGACVQVKEVGKNASEERLIVVS 353
Score = 30.7 bits (66), Expect = 1.6
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI 267
+T++ +P + G IIG+ G I ++R +GA I +
Sbjct: 386 TTRLVVPSNKVGCIIGEGGKVITEMRRRTGAEIRV 420
>12_02_0998 +
25126114-25126596,25129213-25129339,25129349-25129459,
25130122-25130270,25130356-25130643,25130753-25130941,
25131445-25131619,25132219-25132316
Length = 539
Score = 49.6 bits (113), Expect = 3e-06
Identities = 29/69 (42%), Positives = 42/69 (60%), Gaps = 6/69 (8%)
Query: 233 STQVT----IPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRI 288
S+Q+T +P A A+IG AG+ I IR SGA I I E +PG + + I+GS ++
Sbjct: 384 SSQITHSMQVPLSYADAVIGAAGASISYIRRHSGATISIQEGVPG--EMTVEISGSASQV 441
Query: 289 QMAQYLLQQ 297
Q AQ L++Q
Sbjct: 442 QTAQQLIKQ 450
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 234 TQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPG---SNDRIITITGSPGRIQM 290
T++ +P AG++IGK G+ I+ I+ S + I E +P S+DR++ I G P +
Sbjct: 206 TRLLVPASQAGSLIGKQGATIKSIQDASKCVLRILESVPPVALSDDRVVEIQGEPLDVHK 265
Query: 291 AQYLL 295
A L+
Sbjct: 266 AVELI 270
Score = 37.9 bits (84), Expect = 0.010
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
++ +P GA+IG+ G I+K+ ES A I++ + PG DR + I+
Sbjct: 118 RILVPAQKVGAVIGRKGEFIKKMCEESRARIKVLDGPPGVPDRAVMIS 165
>06_02_0257 -
13533689-13533714,13533799-13533925,13534013-13534121,
13534193-13534272,13534758-13534979,13536070-13536318,
13537032-13537484,13539834-13540556
Length = 662
Score = 48.0 bits (109), Expect = 1e-05
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMA 291
++ +V IPK ++ +AGS++ +I SGA + +A+ P + ++++ I+G+P + A
Sbjct: 585 STLEVVIPKSAVASLTMRAGSKLAQISEMSGATVTLADERPDAIEKVVRISGTPEQADKA 644
Query: 292 QYLLQ 296
Q LLQ
Sbjct: 645 QSLLQ 649
Score = 35.1 bits (77), Expect = 0.073
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPG 286
D ++ P D +++G + ++ + G I + + L GS++RII IT G
Sbjct: 338 DIIFRILCPSDKVNSLVGTRDGLLEMLQEDVGVDIRLTDSLDGSDERIIIITSREG 393
Score = 28.7 bits (61), Expect = 6.3
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI 267
+T++ +P+ G ++GK G I ++RAE+ I I
Sbjct: 188 TTRLIVPRLHVGCLLGKGGKIIEQMRAETKTHIRI 222
>03_05_0388 +
23726957-23727418,23730016-23730262,23731072-23731220,
23731313-23731597,23731665-23731889,23734251-23734445
Length = 520
Score = 48.0 bits (109), Expect = 1e-05
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRI 288
+Q + + IP A A+IG AG+ I IR SGA + I E + + I GS ++
Sbjct: 389 RQKVTHNMQIPLSYADAVIGAAGASISYIRRHSGATVTIQESRGAPGEMTVEIIGSASQV 448
Query: 289 QMAQYLLQQSVHES 302
Q AQ L+Q + E+
Sbjct: 449 QTAQQLVQNFMAEA 462
Score = 43.2 bits (97), Expect = 3e-04
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 234 TQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLP---GSNDRIITITGSPGRIQM 290
T++ +P AG++IGK G+ I+ I+ S + + I E LP ++DR++ I G P +Q
Sbjct: 202 TRLLVPASQAGSLIGKQGATIKSIQDSSKSIVRIVETLPLVALNDDRVVEIQGEPVGVQK 261
Query: 291 A 291
A
Sbjct: 262 A 262
Score = 37.5 bits (83), Expect = 0.014
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
++ IP GAIIG+ G I+K+ ES A I+I + PG +R + I+
Sbjct: 111 RILIPAQKVGAIIGRKGEFIKKMCEESKARIKILDGPPGVPERTVMIS 158
>02_05_1263 +
35316083-35316185,35317167-35317220,35317665-35317903,
35317989-35318089,35318390-35318583,35318885-35319003,
35319624-35319749,35320081-35320142,35320265-35320348,
35320580-35320664
Length = 388
Score = 47.6 bits (108), Expect = 1e-05
Identities = 28/80 (35%), Positives = 49/80 (61%), Gaps = 4/80 (5%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEP---LPGSNDRIITITGSPG 286
QD+ T + I + GA++G+AG I +I SGA I+I++ + G+++R +TITG+
Sbjct: 284 QDSLT-IGIADEHIGAVVGRAGRNITEIIQASGARIKISDRGDFIAGTSERKVTITGTSE 342
Query: 287 RIQMAQYLLQQSVHESNPNL 306
IQ A+ ++ Q V S+ +
Sbjct: 343 AIQAAESMIMQRVTASSERI 362
Score = 47.2 bits (107), Expect = 2e-05
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLPGSNDRIITITGSP 285
++ T + + AG IIGK GS I + +++SGA I+++ E PG+NDRII ++G
Sbjct: 56 EKPTHLRFLVSNTAAGCIIGKGGSTINEFQSQSGARIQLSRSHEFFPGTNDRIIMVSGLF 115
Query: 286 GRIQMAQYLLQQSV 299
+ A L+ + +
Sbjct: 116 DEVIKAMELILEKL 129
Score = 44.0 bits (99), Expect = 2e-04
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLPGSNDRIITITGSPGRIQMA 291
++ +P G IIGK GS I+ +S AGI+I+ G +DR++T+TG A
Sbjct: 146 RLVVPNSSCGGIIGKGGSTIKSFIEDSHAGIKISPQDNNFVGLHDRLVTVTGPLDHQMRA 205
Query: 292 QYLLQQSVHE 301
YL+ + E
Sbjct: 206 IYLILSKLSE 215
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/54 (38%), Positives = 36/54 (66%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
+Q+ ++ ++ G+IIGK GS IR +++E+GA I+I EP S +R+I I+
Sbjct: 241 EQEIVFRMICLNEMVGSIIGKGGSTIRALQSETGASIKIIEPNSDSEERVIVIS 294
Score = 37.9 bits (84), Expect = 0.010
Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLP---GSNDRIITITGSPGR 287
+ ++ +P G ++GK GS I ++R +GAGI I E +P ND ++ +TGS
Sbjct: 329 TARLLVPSQHIGCLLGKGGSIIAEMRKITGAGIRIFGNEQIPRCAQRNDELVQVTGSFQS 388
Query: 288 IQMA 291
IQ A
Sbjct: 389 IQDA 392
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 7/74 (9%)
Query: 244 GAIIGKAGSRIRKIRAESGAGIEI------AEPLPGSNDRIITITGSPGRIQMAQYLLQQ 297
G ++GK G + ++R ESGA I + P D +I I+G+ ++ A LL
Sbjct: 121 GCVLGKGGKTVERMRQESGAQIRVFRNRDQLPPWAAPVDELIHISGNFSAVRKA-LLLVT 179
Query: 298 SVHESNPNLGRGNF 311
+ + NP NF
Sbjct: 180 TCLQDNPRPDASNF 193
>01_01_0956 +
7505206-7505322,7505860-7506723,7506841-7507260,
7508091-7508342,7508696-7508953,7509798-7509877,
7509959-7510070,7510492-7510541,7511070-7511171,
7511215-7511276,7511888-7511928
Length = 785
Score = 45.6 bits (103), Expect = 5e-05
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
++ P +G +IGK G I KIR E+G I + E +PG ++R+I IT
Sbjct: 91 RILCPTSKSGNVIGKGGGIIAKIRQETGVKIRVDEVVPGCDERVIVIT 138
Score = 43.2 bits (97), Expect = 3e-04
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 241 DLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITG 283
D G IIGK G+ I+ I+ ++G I++ + +P S DRI+ I+G
Sbjct: 423 DKVGGIIGKGGNNIKSIQNDTGCEIKVLDTVPKSEDRIVFISG 465
Score = 30.7 bits (66), Expect = 1.6
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 5/62 (8%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLP---GSNDRIITITGSPGRIQ 289
++ + + G ++GK GS I ++R SGA I + + +P ND ++ I+G+ IQ
Sbjct: 501 RLIVSPNQVGCLLGKGGSIIAEMRKLSGAHIIVLSKDKIPKGVPENDEVVQISGASEAIQ 560
Query: 290 MA 291
A
Sbjct: 561 EA 562
>08_01_0080 +
566509-566746,566904-567151,567347-567532,567639-567734,
567836-567907,567990-568106,570531-571676
Length = 700
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI---AEPLPGSNDRIITITGSPG 286
Q+TS + +P + G +IGK+G IR ++ SGA I+I AE + R + + G+
Sbjct: 150 QETSRIINVPNNKVGVLIGKSGETIRNLQMNSGAKIQITKDAEADANAPTRSVELVGTLE 209
Query: 287 RIQMAQYLLQQSVHESN 303
I A+ L++ + E++
Sbjct: 210 SIDKAERLIKNVIAEAD 226
Score = 41.1 bits (92), Expect = 0.001
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGS----NDRIITITGSPGRIQM 290
++ +P + G IIGK G I+ ++ SGA I++ P +R + ITG+ +I+
Sbjct: 249 EMLVPDNKVGLIIGKGGETIKTLQTRSGARIQLIPQHPPEGVTLTERTVRITGNKKQIEA 308
Query: 291 AQYLLQQSVHES 302
A+ +++Q++ ++
Sbjct: 309 AKDMIKQAMSQT 320
>10_08_0948 +
21754985-21755290,21756042-21756297,21756845-21756999,
21757077-21757349,21757582-21757776,21757867-21758058
Length = 458
Score = 43.6 bits (98), Expect = 2e-04
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
Q T T + IP A IIG G+ I IRA SGA + I E L +D + + G+ ++Q
Sbjct: 330 QITQT-MQIPLTYAEDIIGVKGANIAYIRANSGAVVTIQESLGSPDDITVEMKGTSSQVQ 388
Query: 290 MAQYLLQQSV 299
A L+Q S+
Sbjct: 389 AAYQLIQDSL 398
Score = 35.5 bits (78), Expect = 0.055
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITG 283
D+ ++ +P G+IIG+ G I+++ E+ A + + E G+ +RI+ ++G
Sbjct: 55 DSVFRLVVPVLKVGSIIGRKGELIKRLVEETKAKVRVLEGPVGATERIVLVSG 107
>03_03_0131 -
14706123-14706171,14706364-14706422,14706504-14706770,
14706857-14707114,14707207-14707629,14707942-14708514
Length = 542
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA--EPLPG---SNDRIITITGSPGR 287
+ ++ +P D G IIGK G I+ IR+++GA I + E LP S D ++ I+G
Sbjct: 139 TVRLLVPSDQIGCIIGKGGHIIQGIRSDTGAHIRVLSNENLPACAISGDELLQISGDSTV 198
Query: 288 IQMAQYLLQQSVHESNPN 305
++ A + +H+ NP+
Sbjct: 199 VRKALLQVSSRLHD-NPS 215
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/54 (37%), Positives = 32/54 (59%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGS 284
DT + P G+IIG+ G +++RA++ A I I E + G ++R+ITI S
Sbjct: 39 DTVYRYLCPSRKIGSIIGRGGEIAKQMRADTQAKIRIGESVSGCDERVITIFSS 92
Score = 32.7 bits (71), Expect = 0.39
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 244 GAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
G +IGK G I++IR ESGA I++ + +D IIT++
Sbjct: 292 GGVIGKGGGIIKQIRQESGAFIKV-DSSNTEDDCIITVS 329
Score = 28.3 bits (60), Expect = 8.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI 267
+T++ + G +IGK GS I +IR S A I I
Sbjct: 366 TTRLLVSTSRIGCLIGKGGSIITEIRRTSRANIRI 400
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGS 284
+V P G +IGK G I+ IR ESGA I++ + + IITIT +
Sbjct: 318 RVLCPAGKIGLVIGKGGVTIKSIRKESGARIDVDDSKNDREESIITITSN 367
Score = 39.1 bits (87), Expect = 0.004
Identities = 15/47 (31%), Positives = 29/47 (61%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
++ P + G +IGK G I IR ++ A +++ +P PG++ R+I +
Sbjct: 52 RILCPDRVIGNVIGKNGKVINSIRQQTSAKVKVVDPHPGADKRVILV 98
Score = 34.7 bits (76), Expect = 0.096
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQYL 294
++TIP ++GK G+ + I SGA IEI E + + I+G+ + Q A+ L
Sbjct: 557 EMTIPASGLSKVMGKHGTNLDNIIKISGAHIEIIESKSSRHGHVARISGTTEQKQSAENL 616
Query: 295 LQ 296
++
Sbjct: 617 IK 618
Score = 33.5 bits (73), Expect = 0.22
Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPG--------SNDRIITIT 282
D + +P + ++IGK+G+ I+++R+ S A I+++ P S D + IT
Sbjct: 144 DEEANILVPASQSASVIGKSGAVIKRLRSTSKAFIKVSPKDPNEVTHSCAMSFDNFVQIT 203
Query: 283 GSPGRIQMAQYLLQQSVHE 301
G ++ A + + +++
Sbjct: 204 GDARAVRKALFAVSTIIYK 222
>07_03_0173 -
14721369-14721503,14722542-14722629,14723580-14723752,
14727237-14727902
Length = 353
Score = 37.1 bits (82), Expect = 0.018
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 245 AIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQYLLQQSVHE 301
A+ G G+ IR SGA + PLP ++D +I I+G+P Q A + V E
Sbjct: 295 AVCGDNGNDFTMIREMSGADVTAHYPLPETSDGMIVISGTPDEAQSALAMFLDLVKE 351
>10_08_0511 +
18435745-18436499,18436624-18436742,18436788-18437372,
18438534-18438667,18439128-18439148,18439656-18439739,
18439832-18440077,18440763-18440925,18441024-18441066,
18441392-18441773,18442212-18442267,18442351-18442417,
18442542-18442721
Length = 944
Score = 36.3 bits (80), Expect = 0.032
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 261 SGAGIEIAEPLPGSNDRIITITGSPGRIQMAQYLLQQSVHESN 303
SGA +++ E PGS++ I+ I G P +++ AQ LLQ + S+
Sbjct: 887 SGARVKLHEAHPGSSESIVEIQGIPDQVKAAQSLLQGFIGASS 929
Score = 29.9 bits (64), Expect = 2.7
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI 267
+T++ +P + G I+G+ G I ++R +GA I +
Sbjct: 596 TTRLVVPSNKVGCILGEGGKVITEMRRRTGAEIRV 630
>04_04_1500 +
34010819-34011016,34013267-34013308,34014195-34014204,
34014526-34014586,34014621-34014678,34015266-34015412,
34015643-34016205,34018942-34019728
Length = 621
Score = 34.7 bits (76), Expect = 0.096
Identities = 18/73 (24%), Positives = 39/73 (53%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQ 292
+ ++++ LAG IIGK G ++I +G + I + SN + I + G+ +I+ A
Sbjct: 489 TAKISVDASLAGGIIGKGGVNTKQICRVTGVKLSIRDHESDSNLKNIELEGNFDQIKQAS 548
Query: 293 YLLQQSVHESNPN 305
++ + + +P+
Sbjct: 549 NMVGELIATISPS 561
>06_03_0766 -
24425486-24426245,24430766-24430855,24430951-24431070,
24431568-24431746,24432046-24432231,24432454-24432547,
24432679-24432743,24433652-24433987
Length = 609
Score = 33.5 bits (73), Expect = 0.22
Identities = 17/67 (25%), Positives = 36/67 (53%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQ 292
+ ++++ LAG IIGK G+ + I +GA + I + N + I + G+ +I+ A
Sbjct: 482 TAKISVDASLAGGIIGKGGTNTKHISRMTGAKLAIRDNESNPNLKNIELEGTFDQIKHAS 541
Query: 293 YLLQQSV 299
++ + +
Sbjct: 542 AMVTELI 548
>02_01_0703 + 5251901-5251950,5252783-5253554
Length = 273
Score = 33.1 bits (72), Expect = 0.29
Identities = 16/67 (23%), Positives = 38/67 (56%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQ 292
+ ++++ LAG IIG+ G ++I +GA + I + +N + I + G+ +I+ A
Sbjct: 145 TAKISVDASLAGGIIGRGGVNTKQISRVTGAKLAIRDHESDTNLKNIELEGTFDQIKNAS 204
Query: 293 YLLQQSV 299
++++ +
Sbjct: 205 AMVRELI 211
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 33.1 bits (72), Expect = 0.29
Identities = 18/47 (38%), Positives = 25/47 (53%)
Query: 238 IPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGS 284
IP A IIG G I IR+ SGA +++ E N+ ++ I GS
Sbjct: 345 IPLPFAEEIIGARGQNISYIRSVSGAVVDLEESRDYPNEVLVMIKGS 391
Score = 31.9 bits (69), Expect = 0.68
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 5/61 (8%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPL-----PGSNDRIITITGSPGR 287
S ++ +P A +IGK G RI+ I+ +GA ++I + + ++RI+ I G+P +
Sbjct: 208 SAKLLVPSAQATHLIGKQGVRIKSIQETTGATVKIIDKVELLSYDVVDERIVDIHGAPLK 267
Query: 288 I 288
+
Sbjct: 268 V 268
>10_07_0195 +
13972656-13972970,13973518-13973848,13975312-13975463,
13975573-13976280,13976424-13976615,13977264-13977425
Length = 619
Score = 32.3 bits (70), Expect = 0.51
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGR-IQMAQY 293
++ +P A A+IG G+RI IR SG+ + I + + I ITGS +Q+A+
Sbjct: 506 KMQVPIFYAEAVIGPTGARIDYIRQASGSSVVIKD--LDDSAMSIEITGSAATDVQIAEQ 563
Query: 294 LLQQSVHES 302
L++ + E+
Sbjct: 564 LIKNFMAEA 572
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI 267
++ IP GA+IG +G R+R++ E+ A + +
Sbjct: 62 RMLIPATKVGAVIGHSGERLRRLCEETKACVRV 94
>10_07_0037 -
12239296-12239367,12239484-12239606,12239699-12239758,
12239892-12240009,12240133-12240200,12240307-12240378,
12240677-12240834,12240964-12241199,12241643-12242007
Length = 423
Score = 30.7 bits (66), Expect = 1.6
Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 25 TFTASELIPPPTAPDGGSRTACVLD-----FDNSLKTGARLKIFSNS-APQSSERIVQLI 78
TF E T D T D N L T R+ FSN AP R+V +
Sbjct: 206 TFKQKEAGSMETTTDANQNTGATCDKVKSQLSNFLPTSRRIMQFSNGQAPSPGARVVYID 265
Query: 79 GKPDSIVSGVREVLDLVRQV 98
G D +G E+L RQ+
Sbjct: 266 GAFDLFHAGHVEILRSARQL 285
>01_06_0028 -
25746250-25746526,25746839-25746975,25747089-25747292,
25747747-25747855,25747951-25748081,25748156-25748253,
25748827-25749018,25749075-25749177,25749275-25749445
Length = 473
Score = 29.5 bits (63), Expect = 3.6
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 75 VQLIGKPDSIVSGVREVLDLVRQVPIKGPIQAYDPHNYDDF 115
V L G DS V + ++DLVR +P K + +++PH+ F
Sbjct: 374 VMLAGVNDS-VDDAKRLVDLVRGIPCKINLISFNPHSGSQF 413
>04_04_1049 +
30414545-30414596,30414732-30414853,30415121-30415198,
30415329-30415459,30415644-30417552,30417797-30417836,
30418194-30418259,30418583-30418734
Length = 849
Score = 29.1 bits (62), Expect = 4.8
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 9/106 (8%)
Query: 8 RVGALQVQEGGTAGRWCTFTASELIPPPTAP-----DGGSRTACVLDFDNSLKTGARLKI 62
RVGA GR + + L+PPP AP GG A +S T A + I
Sbjct: 197 RVGAEDGSSTRRLGRMDSGLSVNLVPPPLAPRHGCQRGGRGAAATTKLSSS--TDAAVTI 254
Query: 63 FSNSAPQSSERIVQLIGKPDSIVSGVREVLDLVRQVPIKGPIQAYD 108
S+ P S E + + + + +EV D R P +G + + +
Sbjct: 255 RSSIRPSSREFMERSPRRAGEAENDRKEVADAAR--PSRGELSSME 298
>05_02_0021 -
5674587-5674799,5674898-5675031,5675129-5675207,
5675737-5675799,5676420-5676482,5676557-5676673,
5676756-5676803,5676918-5677103,5677948-5678047,
5678323-5678562,5678583-5678686
Length = 448
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/54 (29%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 51 DNSLKTGARLKIFSNSAPQSSERIVQ-LIGKPDSIVSGVREVLDLVRQVPIKGP 103
D S K A +K +++A ++ + ++G P +++SG R V +++ +VP+K P
Sbjct: 287 DTSDKGMALVKHGTDTAKSRKDKKNEVMVGFPINLISGSRVVDEILGRVPVKAP 340
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.315 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,731,556
Number of Sequences: 37544
Number of extensions: 265230
Number of successful extensions: 537
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 475
Number of HSP's gapped (non-prelim): 60
length of query: 311
length of database: 14,793,348
effective HSP length: 82
effective length of query: 229
effective length of database: 11,714,740
effective search space: 2682675460
effective search space used: 2682675460
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)
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