Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001954-TA|BGIBMGA001954-PA|IPR004088|KH, type 1,
IPR004087|KH
(311 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41) 83 2e-16
SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.) 57 2e-08
SB_53788| Best HMM Match : KH_1 (HMM E-Value=0) 55 6e-08
SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30) 50 2e-06
SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 9e-04
SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.006
SB_21167| Best HMM Match : KH_1 (HMM E-Value=0) 39 0.006
SB_6146| Best HMM Match : KH_1 (HMM E-Value=1.4e-05) 36 0.042
SB_33399| Best HMM Match : Ank (HMM E-Value=0) 34 0.17
SB_41750| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_14003| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.4
SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84) 29 6.4
SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_6248| Best HMM Match : KH_1 (HMM E-Value=1.6e-41)
Length = 487
Score = 83.4 bits (197), Expect = 2e-16
Identities = 41/59 (69%), Positives = 47/59 (79%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQM 290
TSTQVTIPKDLAG+IIGK G RI+ IR A I+I +PLPGSNDRIITITG+ +I M
Sbjct: 321 TSTQVTIPKDLAGSIIGKGGERIKMIRNRCNAVIKIDDPLPGSNDRIITITGNQEQINM 379
Score = 42.3 bits (95), Expect = 5e-04
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
T+ ++ I AG IIGK G+ IR++R E A + + P SN+R++TIT
Sbjct: 53 TTLRILIQSKDAGGIIGKGGTNIRRLRTEYNAVVNV--PDTNSNERVLTIT 101
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGA 263
Q+ + + G+IIG+AG +I++IR S A
Sbjct: 128 QMLVQRSQVGSIIGRAGYKIKEIREASSA 156
>SB_35585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 655
Score = 56.8 bits (131), Expect = 2e-08
Identities = 24/69 (34%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLPGSNDRIITITGSPGRIQMAQ 292
++ +P+D+ G +IGK G I++I+AESGA ++ A+ P S+DR+ T+ GS +IQ +
Sbjct: 216 EIPVPRDVVGFVIGKGGETIKRIQAESGARVQFNPAKDNPNSSDRMATVQGSQEQIQKVE 275
Query: 293 YLLQQSVHE 301
++ + + +
Sbjct: 276 KIINEIISQ 284
Score = 49.6 bits (113), Expect = 3e-06
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSN-DRIITITGSPGRIQMAQY 293
++ +P + G IIGK G I++I A SGA +E+ +P +N + I G+ +IQ A+
Sbjct: 329 EMPVPGNKCGLIIGKGGETIKQIIAVSGAHVELNRNVPENNPTKFFVIRGTDQQIQQAEK 388
Query: 294 LLQQSVHESNPNLGRG 309
++ + + + GRG
Sbjct: 389 MINEKISDQRGGQGRG 404
>SB_53788| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 356
Score = 55.2 bits (127), Expect = 6e-08
Identities = 26/76 (34%), Positives = 46/76 (60%), Gaps = 3/76 (3%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLPGSNDRIITITGSP 285
Q + ++T+P +L GAI+GK G I + SGA I+++ E +PG+++R + ITG
Sbjct: 269 QSSATLEITVPDELIGAILGKGGKTITEFMQYSGARIQVSQKGEFVPGTSNRKVVITGDV 328
Query: 286 GRIQMAQYLLQQSVHE 301
Q+A +L+ Q + +
Sbjct: 329 PAAQLAHFLVTQRIQQ 344
Score = 48.0 bits (109), Expect = 1e-05
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGS--NDRIITITGSPGRIQMAQ 292
++ +P AG IIGKAGS I+ I ++GA I+I++ S +RI+ + GSP ++ A
Sbjct: 106 KIIVPNSTAGMIIGKAGSAIKSISEQTGARIQISQKDAESVAGERIVCVGGSPEQVTAAC 165
Query: 293 YLLQQSVHE 301
++ V E
Sbjct: 166 VIITSKVPE 174
Score = 38.3 bits (85), Expect = 0.008
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLPGSNDRIITITGSPGRI-QM 290
++ +P AG+IIGK G I +++ +GA I+++ + PG+ +RI I G I QM
Sbjct: 15 KILVPNYAAGSIIGKGGQNIAQVQQTTGARIKLSPNNQYYPGTQERIGLIMGEVENIVQM 74
Query: 291 AQYLLQQ 297
+++ +
Sbjct: 75 LDFVIDK 81
Score = 33.9 bits (74), Expect = 0.17
Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 2/46 (4%)
Query: 56 TGARLKIFSNSA--PQSSERIVQLIGKPDSIVSGVREVLDLVRQVP 99
TGAR+K+ N+ P + ERI ++G+ ++IV + V+D +RQ P
Sbjct: 41 TGARIKLSPNNQYYPGTQERIGLIMGEVENIVQMLDFVIDKIRQEP 86
>SB_3277| Best HMM Match : KH_1 (HMM E-Value=4.3e-30)
Length = 379
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMA 291
TS +TI K G+IIG+ GS I IR SGA I+I + G + R + ITG+ + +A
Sbjct: 192 TSHTMTILKGAVGSIIGQKGSYITGIRQMSGASIKIGDSENGDDKREVLITGTAEAVGLA 251
Query: 292 QYLL 295
Q+L+
Sbjct: 252 QFLI 255
Score = 33.1 bits (72), Expect = 0.30
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGI 265
++ +P G+IIGK G++I++IR SGA +
Sbjct: 92 RLIVPGSQCGSIIGKGGAKIKEIREVSGASV 122
>SB_42869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 41.5 bits (93), Expect = 9e-04
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPG--SNDRIITITGSPGRIQMAQ 292
++ P+ L G +IG+ G ++ I +SGA I + PG S RII+++G +I+ A
Sbjct: 183 EIEFPQILCGRLIGRKGKNVKAISDQSGAKIRLIPQSPGEVSTHRIISLSGDSSQIKSA- 241
Query: 293 YLLQQSVHESNPNL 306
S+H+ P +
Sbjct: 242 ---LDSIHDRFPTV 252
>SB_27288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 38.7 bits (86), Expect = 0.006
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLP---GSN----DRIIT 280
+TS ++ +P ++G IIG+ G+ I+KI+ E+G I EP G+N +R I
Sbjct: 55 ETSLELKVPASVSGVIIGRGGANIKKIQKETGTYINFKDDDEPKEKDFGANRTPSERTIV 114
Query: 281 ITGSPGRIQMAQYLLQQSVHE 301
I G + + A+ ++++ V E
Sbjct: 115 IKGEREKARKAELIIKKIVAE 135
>SB_21167| Best HMM Match : KH_1 (HMM E-Value=0)
Length = 1650
Score = 38.7 bits (86), Expect = 0.006
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 236 VTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQ 292
V I K +IG+ G+ I+KIR E+ IE+ P GS+ +I ITG +++ A+
Sbjct: 592 VPIFKQFHKNVIGRGGTTIKKIREETDTKIEL--PAEGSDSDVIIITGHKAQVEAAR 646
Score = 36.3 bits (80), Expect = 0.032
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMA 291
T +V IP +IIG G IR + + G G+ I P GSN + I G ++ A
Sbjct: 660 TQLEVHIPSKFHNSIIGAKGRLIRSVMEDCG-GVSIKFPPEGSNSDKVLIRGPKDDVEKA 718
Query: 292 QYLLQQSVHE 301
+ L + +E
Sbjct: 719 KKQLLELTNE 728
Score = 32.3 bits (70), Expect = 0.52
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 246 IIGKAGSRIRKIRAESGAGIEIAEPLPGSNDR-IITITGSPGRIQMAQYLLQQSVHE 301
+IG+ G+ IRK+R +GA I P D+ +ITI G ++ A+ L +S+ +
Sbjct: 748 LIGRGGASIRKVRENTGA--RIVFPAAKDEDKELITIIGKQEAVEAAKDELLKSIKD 802
Score = 31.1 bits (67), Expect = 1.2
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQYL 294
Q+ IP D +IG GS +RK+ E I I P +D +++ G ++ A
Sbjct: 920 QMHIPFDYHRFVIGPKGSNVRKMMDEFSVNISI-PPAKDESDS-VSVIGPRANVERAMKA 977
Query: 295 LQQSVHE 301
L+ V E
Sbjct: 978 LEAKVAE 984
>SB_6146| Best HMM Match : KH_1 (HMM E-Value=1.4e-05)
Length = 148
Score = 35.9 bits (79), Expect = 0.042
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
Q ++ IP+ AGA+IG GS ++ SGA P S +R + + G P
Sbjct: 88 QPIRARLAIPQKYAGAVIGTKGSFCNYMKTLSGASRVHVSPDDKSGERYVEVIGHP---- 143
Query: 290 MAQY 293
MAQY
Sbjct: 144 MAQY 147
>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
Length = 1416
Score = 33.9 bits (74), Expect = 0.17
Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI-AEPLPGSNDRIITITGSPGRIQMA 291
S ++++ + IIG+AG + IR +GA I+I + IITI G + A
Sbjct: 911 SKKMSVSSSVVSRIIGRAGCNVNAIRETTGAHIDIDTSRQKSTGSCIITIKGPADATRQA 970
Query: 292 QYLLQQSVHE 301
+L+ + +
Sbjct: 971 HHLISALIKD 980
>SB_41750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 29.5 bits (63), Expect = 3.7
Identities = 24/59 (40%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 44 TACVLDFDNSLKTGAR-LKIFSNSAPQSSERIVQLIGKPDSIVSGVREVLDLVRQVPIK 101
T C L FDNSL G R + F+ QS+ER P+ + + R VL L+R VP K
Sbjct: 38 TRCRLSFDNSL--GVRDTEGFNIPRIQSTERSGTT--GPNFLSASTRSVLILIRPVPTK 92
>SB_24937| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 589
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 7/72 (9%)
Query: 233 STQVTIPKDLAGA----IIGKAGSRIRKIRAESGAGIEIAEPLPGSN---DRIITITGSP 285
S++VT+ D++ IIGK G I+K+ ++G I + GS+ ++I G P
Sbjct: 339 SSRVTLKMDVSHTDHSHIIGKGGYNIKKVMQDTGCHIHFPDSNRGSSSEKSNQVSIAGQP 398
Query: 286 GRIQMAQYLLQQ 297
++ A+ +++
Sbjct: 399 LGVESARLHIRE 410
Score = 29.5 bits (63), Expect = 3.7
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGS 284
S Q+ I IIGK G+ I+ I ++GA + +P ++ ++GS
Sbjct: 471 SMQIDIAPQHHLFIIGKNGANIKHITQQTGASVNFPDPNGTQRKGVVFLSGS 522
>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 831
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 236 VTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAE 269
V + + G +IGK G+RI I E+GA I + +
Sbjct: 300 VELKESQIGMVIGKGGNRINSIGQETGAKIYVKD 333
>SB_14003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 21 GRWCTFTASELIPPPTAPDGGSRTACVLDFDNS 53
G C + + ++PPP PD G +T+ ++D S
Sbjct: 13 GVMCNYFRNSVMPPPP-PDNGQKTSMMVDLSTS 44
>SB_1345| Best HMM Match : IBN_N (HMM E-Value=0.84)
Length = 746
Score = 28.7 bits (61), Expect = 6.4
Identities = 11/27 (40%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 82 DSIVSGVR-EVLDLVRQVPIKGPIQAY 107
+SI SGVR +++D++RQ+ + P++A+
Sbjct: 440 NSIFSGVRSQIMDILRQITLHFPVEAF 466
>SB_25863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 813
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 246 IIGKAGSRIRKIRAESGAGIEIAE 269
+IG+ G I IR++SGA I+I E
Sbjct: 410 VIGEGGRSINSIRSQSGARIQIKE 433
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,056,735
Number of Sequences: 59808
Number of extensions: 243693
Number of successful extensions: 549
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 36
length of query: 311
length of database: 16,821,457
effective HSP length: 82
effective length of query: 229
effective length of database: 11,917,201
effective search space: 2729039029
effective search space used: 2729039029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)
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