Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001954-TA|BGIBMGA001954-PA|IPR004088|KH, type 1,
IPR004087|KH
(311 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g64390.1 68418.m08089 KH domain-containing RNA-binding protei... 53 3e-07
At2g25970.1 68415.m03117 KH domain-containing protein 49 5e-06
At5g04430.2 68418.m00438 KH domain-containing protein NOVA, puta... 48 1e-05
At5g04430.1 68418.m00437 KH domain-containing protein NOVA, puta... 48 1e-05
At1g51580.1 68414.m05806 KH domain-containing protein 48 1e-05
At5g46190.1 68418.m05681 KH domain-containing protein strong sim... 47 2e-05
At5g64390.2 68418.m08088 KH domain-containing RNA-binding protei... 45 6e-05
At4g10070.1 68417.m01647 KH domain-containing protein DNA-direct... 45 8e-05
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 45 8e-05
At5g53060.1 68418.m06592 KH domain-containing protein 44 2e-04
At2g22600.1 68415.m02679 KH domain-containing protein 43 2e-04
At1g14170.1 68414.m01675 KH domain-containing protein location o... 43 2e-04
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 43 3e-04
At5g15270.2 68418.m01789 KH domain-containing protein various pr... 42 5e-04
At5g15270.1 68418.m01788 KH domain-containing protein various pr... 42 5e-04
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 40 0.002
At4g18375.2 68417.m02727 KH domain-containing protein contains s... 40 0.003
At4g18375.1 68417.m02726 KH domain-containing protein contains s... 40 0.003
At4g26000.1 68417.m03745 KH domain-containing protein single-str... 39 0.005
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 32 0.43
At4g35090.1 68417.m04984 catalase 2 identical to catalase 2 SP:P... 31 1.3
At2g03110.1 68415.m00264 KH domain-containing protein 30 2.3
At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to c... 28 7.0
At1g15770.1 68414.m01892 expressed protein 28 9.2
>At5g64390.1 68418.m08089 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 857
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/78 (32%), Positives = 45/78 (57%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQM 290
+T+ ++ +P + + G+ G + ++R SGA + I EP G++DRII I+G+P + Q
Sbjct: 775 NTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIVISGTPDQTQA 834
Query: 291 AQYLLQQSVHESNPNLGR 308
AQ LL + +L +
Sbjct: 835 AQNLLHAFILTGETSLSK 852
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 239 PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
P GA+IGK+G+ I++++ +GA I + EP GS DR+ITI
Sbjct: 54 PLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITI 96
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGS 284
QD ++ + AG +IG G +R + +E+GA I + L +R+I +T S
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS 504
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLP---GSNDRIITITGSPGR 287
+ ++ +P G ++GK G + ++R +GA I+I E P ND+++ ITG
Sbjct: 543 TARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPN 602
Query: 288 IQMAQYLLQQSVHES 302
++ A + + + +S
Sbjct: 603 VREAIFHITSRLRDS 617
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 243 AGAIIGKAGSRIRKIRAESGAGIEI-AEPLP---GSNDRIITITGSPGRIQMA 291
AGA+IGK G + IR E+G I I E LP ++D ++ + G+ ++ A
Sbjct: 161 AGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKA 213
>At2g25970.1 68415.m03117 KH domain-containing protein
Length = 632
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPL---PGSNDRIITITGSPG 286
Q T+ ++ IP G IIGK G I+ ++ +SGA I++ + P R + +TG+P
Sbjct: 132 QGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCATRTVDLTGTPD 191
Query: 287 RIQMAQYLLQQSVHES 302
+I A+ L+ + E+
Sbjct: 192 QISKAEQLITDVLQEA 207
Score = 37.9 bits (84), Expect = 0.009
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 6/71 (8%)
Query: 238 IPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPL---PG--SNDRIITITGSPGRIQMAQ 292
IP + G IIGK G I+ ++A++GA I++ PL PG + +R + I G +I+ A+
Sbjct: 236 IPNNKVGLIIGKGGETIKSMQAKTGARIQVI-PLHLPPGDPTPERTLQIDGITEQIEHAK 294
Query: 293 YLLQQSVHESN 303
L+ + + N
Sbjct: 295 QLVNEIISGEN 305
>At5g04430.2 68418.m00438 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 334
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLPGSNDRIITITGSP 285
++ T + + AG++IGK GS I + +A+SGA I+++ E PG+ DRII I+GS
Sbjct: 32 EKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSI 91
Query: 286 GRIQMAQYLLQQSVH 300
+ L+ +H
Sbjct: 92 KEVVNGLELILDKLH 106
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 229 QQDTSTQVTI--PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEP---LPGSNDRIITITG 283
+++ ST VTI + G ++G+ G I +I +GA I+I++ + G+ DR ++ITG
Sbjct: 250 KEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITG 309
Query: 284 SPGRIQMAQYLLQQSV 299
IQ A+ +++Q V
Sbjct: 310 PQRAIQQAETMIKQKV 325
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLP----GSNDRIITITGS 284
++ +P G IIGK G+ I+ ES AGI+I+ PL G +DR++T++G+
Sbjct: 124 RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKIS-PLDNTFYGLSDRLVTLSGT 176
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 55 KTGARLKIFSNSA--PQSSERIVQLIGKPDSIVSGVREVLD 93
K+GAR+++ N P +++RI+ + G +V+G+ +LD
Sbjct: 63 KSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILD 103
>At5g04430.1 68418.m00437 KH domain-containing protein NOVA,
putative astrocytic NOVA-like RNA-binding protein, Homo
sapiens, U70477
Length = 313
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA---EPLPGSNDRIITITGSP 285
++ T + + AG++IGK GS I + +A+SGA I+++ E PG+ DRII I+GS
Sbjct: 32 EKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQEFFPGTTDRIIMISGSI 91
Query: 286 GRIQMAQYLLQQSVH 300
+ L+ +H
Sbjct: 92 KEVVNGLELILDKLH 106
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/76 (32%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 229 QQDTSTQVTI--PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEP---LPGSNDRIITITG 283
+++ ST VTI + G ++G+ G I +I +GA I+I++ + G+ DR ++ITG
Sbjct: 229 KEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKISDRGDFMSGTTDRKVSITG 288
Query: 284 SPGRIQMAQYLLQQSV 299
IQ A+ +++Q V
Sbjct: 289 PQRAIQQAETMIKQKV 304
Score = 39.5 bits (88), Expect = 0.003
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLP----GSNDRIITITGS 284
++ +P G IIGK G+ I+ ES AGI+I+ PL G +DR++T++G+
Sbjct: 124 RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKIS-PLDNTFYGLSDRLVTLSGT 176
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/41 (31%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 55 KTGARLKIFSNSA--PQSSERIVQLIGKPDSIVSGVREVLD 93
K+GAR+++ N P +++RI+ + G +V+G+ +LD
Sbjct: 63 KSGARIQLSRNQEFFPGTTDRIIMISGSIKEVVNGLELILD 103
>At1g51580.1 68414.m05806 KH domain-containing protein
Length = 621
Score = 47.6 bits (108), Expect = 1e-05
Identities = 19/54 (35%), Positives = 37/54 (68%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
+++ + ++ P D G++IGK G+ +R ++ ESGA I++++P S +RII I+
Sbjct: 273 EEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVIS 326
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/63 (25%), Positives = 35/63 (55%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQ 292
+ ++ IP+ G + G+ S + I+ SGA + + +P G+ + ++ ++G+ + AQ
Sbjct: 550 NVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQ 609
Query: 293 YLL 295
LL
Sbjct: 610 SLL 612
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 239 PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLP-GSNDRIITITGSPGR 287
P GAIIGK GS IR +++ +G+ I + + +P S +R++ I G+
Sbjct: 26 PATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPSGK 75
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 246 IIGKAGSRIRKIRAESGAGIEIAE-----PLPGSNDRIITITGSPGRIQMAQYLLQQSVH 300
++ K G I+KIR +SGA + I+ P D +I + G ++ A L+ +
Sbjct: 162 LMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQ 221
Query: 301 ES 302
ES
Sbjct: 222 ES 223
>At5g46190.1 68418.m05681 KH domain-containing protein strong
similarity to unknown protein (pir||T04533)
Length = 644
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
++ P + G++IGK+G I IR E+ A I++ +P PG ++R+ITI
Sbjct: 47 RILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITI 93
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/67 (32%), Positives = 37/67 (55%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
Q T+ +V IP + G ++G+ G + IR SGA IEI++ R+ I+G+ + +
Sbjct: 572 QSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKNSHGGRVALISGTSEQKR 631
Query: 290 MAQYLLQ 296
A+ L Q
Sbjct: 632 TAENLFQ 638
Score = 32.3 bits (70), Expect = 0.43
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 244 GAIIGKAGSRIRKIRAESGAGIEIAEPLPG-SNDRIITITG--SPGRIQM----AQYLLQ 296
G +IGK G I+ IR SG+ IE+ + +D +IT+T SP ++ A LLQ
Sbjct: 329 GRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQ 388
Query: 297 QSVHESN 303
+ +++ +
Sbjct: 389 EKINDED 395
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAE-----PLPGSNDRIITITGSPGRIQ 289
Q+ + + G IIGK+GS I +IR + A I I++ ND ++ I+G ++
Sbjct: 402 QLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVR 461
Query: 290 MA 291
A
Sbjct: 462 DA 463
Score = 29.1 bits (62), Expect = 4.0
Identities = 17/78 (21%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGI-----EIAEP---LPGSNDRIITITGSPG 286
++ +P +IGK+GS I+ IR + A + ++++P D I+ I+G
Sbjct: 153 RLLVPSSQCSIVIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETE 212
Query: 287 RIQMAQYLLQQSVHESNP 304
++ A + + +++ +P
Sbjct: 213 SVKKALFAVSAIMYKVSP 230
>At5g64390.2 68418.m08088 KH domain-containing RNA-binding protein
(HEN4) contains similarity to RNA-binding protein;
identical to cDNA HEN4 isoform 2 (HEN4) GI:28261404;
contains Pfam domain PF00013: KH domain; identical to
cDNA HEN4 (HEN4) GI:28261402
Length = 824
Score = 45.2 bits (102), Expect = 6e-05
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 239 PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
P GA+IGK+G+ I++++ +GA I + EP GS DR+ITI
Sbjct: 54 PLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITI 96
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGS 284
QD ++ + AG +IG G +R + +E+GA I + L +R+I +T S
Sbjct: 450 QDVVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS 504
Score = 35.1 bits (77), Expect = 0.061
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLP---GSNDRIITITGSPGR 287
+ ++ +P G ++GK G + ++R +GA I+I E P ND+++ ITG
Sbjct: 543 TARLVVPTSQIGCVLGKGGVIVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPN 602
Query: 288 IQMAQYLLQQSVHES 302
++ A + + + +S
Sbjct: 603 VREAIFHITSRLRDS 617
Score = 32.7 bits (71), Expect = 0.32
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 243 AGAIIGKAGSRIRKIRAESGAGIEI-AEPLP---GSNDRIITITGSPGRIQMA 291
AGA+IGK G + IR E+G I I E LP ++D ++ + G+ ++ A
Sbjct: 161 AGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKA 213
>At4g10070.1 68417.m01647 KH domain-containing protein DNA-directed
RNA polymerase (EC 2.7.7.6) II largestchain - mouse,
PIR2:A28490
Length = 725
Score = 44.8 bits (101), Expect = 8e-05
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI---AEPLPGSNDRIITITGSPG 286
Q T+ ++ +P G +IGK G IR ++ SGA I+I +E P S R + I GS
Sbjct: 174 QSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSALRPVEIIGSVA 233
Query: 287 RIQMAQYLLQQSVHES 302
I+ A+ L+ + E+
Sbjct: 234 CIESAEKLISAVIAEA 249
Score = 35.5 bits (78), Expect = 0.046
Identities = 19/72 (26%), Positives = 40/72 (55%), Gaps = 5/72 (6%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI----AEPLPGSNDRIITITGSPGRIQM 290
++ +P D G IIG+ G I+ ++ SGA ++ AE G +R + I+G +I +
Sbjct: 275 EIKVPNDKVGLIIGRGGETIKNMQTRSGARTQLIPQHAEG-DGLKERTVRISGDKMQIDI 333
Query: 291 AQYLLQQSVHES 302
A +++ ++++
Sbjct: 334 ATDMIKDVMNQN 345
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 44.8 bits (101), Expect = 8e-05
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI---AEPLPGSNDRIITITGSPG 286
Q T+ ++ +P G +IGK G +R ++ SGA I+I AE P S R + I G+
Sbjct: 230 QSTTRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSALRPVEIIGTVS 289
Query: 287 RIQMAQYLLQQSVHE 301
I+ A+ L+ + E
Sbjct: 290 CIEKAEKLINAVIAE 304
>At5g53060.1 68418.m06592 KH domain-containing protein
Length = 652
Score = 43.6 bits (98), Expect = 2e-04
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMA 291
++ +V +P+ + ++ K+ +++ +I SGA + I E P II I+G+P + + A
Sbjct: 577 STLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERA 636
Query: 292 QYLLQ---QSVHESNP 304
Q LLQ S+ E P
Sbjct: 637 QSLLQGFILSIQEDGP 652
Score = 42.3 bits (95), Expect = 4e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 243 AGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGR 287
AG +IGK+G+ I+ IR +GA I + E +PG +RII I+ + R
Sbjct: 79 AGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRR 123
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/48 (29%), Positives = 30/48 (62%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
Q+ P D ++G++ I ++ E G + +++P+ GS+++IITI+
Sbjct: 328 QILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITIS 375
>At2g22600.1 68415.m02679 KH domain-containing protein
Length = 632
Score = 43.2 bits (97), Expect = 2e-04
Identities = 18/41 (43%), Positives = 29/41 (70%)
Query: 242 LAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
+AG IIGK G+ IR ++ E+GA I + PL S +R++T++
Sbjct: 287 VAGGIIGKQGTIIRALQNETGASISVGAPLKVSGERVVTVS 327
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGS 284
+T+ +V + G IIG G + K+R E+G I P+ GS+ ++ I GS
Sbjct: 24 ETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGS 77
Score = 34.7 bits (76), Expect = 0.080
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 244 GAIIGKAGSRIRKIRAESGAGIEI-AEPLPGS-NDRIITITGSPGRIQMAQYLLQQSVHE 301
GA++G G + +R SGA I + P+ G+ ND +I ITG ++ A ++ +
Sbjct: 152 GAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTKNDELIQITGDVLAVKKALVMVSSYIQN 211
Query: 302 SNP 304
+ P
Sbjct: 212 NAP 214
>At1g14170.1 68414.m01675 KH domain-containing protein location of
EST 219C14T7 , gb|N38506
Length = 454
Score = 43.2 bits (97), Expect = 2e-04
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
+DT + P G+IIGK G ++IR+E+ + + I E LPG +R++T+
Sbjct: 17 EDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTM 68
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIE-IAEPLPG-----SNDRIITIT 282
+Q + ++ +P D G +IGK G I+ +R ++ A I I + LP S+D ++ I
Sbjct: 118 KQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLII 177
Query: 283 GSPGRIQMAQYLLQQSVHESNPN 305
G P ++ A Y + +H+ NP+
Sbjct: 178 GEPLVVREALYQVASLLHD-NPS 199
Score = 33.1 bits (72), Expect = 0.24
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 239 PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
P + G +IGK G I +IR E+GA I + +D II I+
Sbjct: 251 PAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDCIIFIS 294
Score = 31.9 bits (69), Expect = 0.57
Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLP---GSNDRIITITGSP 285
ST++ + G +IGK G+ I ++R+ + A I I E +P ++ ++ ITGSP
Sbjct: 330 STRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSP 387
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 42.7 bits (96), Expect = 3e-04
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
Q + Q+ IP A A+IG +GS I R SGA + I E + + ++G+ ++Q
Sbjct: 456 QQVTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQ 515
Query: 290 MAQYLLQQSVHES 302
A L+Q + E+
Sbjct: 516 TAVQLIQNFMAEA 528
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITG 283
+T ++ +P G+IIG+ G I+KI E+ A I+I + PG+ +R + ++G
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSG 238
Score = 38.3 bits (85), Expect = 0.007
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLPG---SNDRIITITGSPGR 287
ST++ +P AG++IGK G ++ I+ S + + +E LP +DR++ + G P
Sbjct: 278 STRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTS 337
Query: 288 IQMAQYLL 295
+ A L+
Sbjct: 338 VHRALELI 345
>At5g15270.2 68418.m01789 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAE----PLPGSN-DRIITITG 283
++ + ++ +P D G I+G+ G ++ IR+E+GA I I + PL N D +I I+G
Sbjct: 144 EKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISG 203
Query: 284 SPGRIQMAQYLLQQSVHESNPN 305
++ A + +HE NP+
Sbjct: 204 EVLIVKKALLQIASRLHE-NPS 224
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
+ DT + P G++IG+ G ++++R ++ + I I E +PG ++R+ITI
Sbjct: 47 RDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITI 99
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 239 PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
P + ++IGK G+ I ++R E+ A I++ ND +ITI+
Sbjct: 291 PVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLP---GSNDRIITITG 283
+T++ +P G I+GK G+ I ++R + A I I E LP +D ++ I+G
Sbjct: 371 TTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISG 426
>At5g15270.1 68418.m01788 KH domain-containing protein various
predicted proteins, Arabidopsis thaliana and Oryza
sativa
Length = 548
Score = 41.9 bits (94), Expect = 5e-04
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAE----PLPGSN-DRIITITG 283
++ + ++ +P D G I+G+ G ++ IR+E+GA I I + PL N D +I I+G
Sbjct: 144 EKQVTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISG 203
Query: 284 SPGRIQMAQYLLQQSVHESNPN 305
++ A + +HE NP+
Sbjct: 204 EVLIVKKALLQIASRLHE-NPS 224
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/53 (32%), Positives = 33/53 (62%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
+ DT + P G++IG+ G ++++R ++ + I I E +PG ++R+ITI
Sbjct: 47 RDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITI 99
Score = 31.9 bits (69), Expect = 0.57
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 239 PKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITIT 282
P + ++IGK G+ I ++R E+ A I++ ND +ITI+
Sbjct: 291 PVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITIS 334
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEI--AEPLP---GSNDRIITITG 283
+T++ +P G I+GK G+ I ++R + A I I E LP +D ++ I+G
Sbjct: 371 TTRLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISG 426
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/68 (29%), Positives = 42/68 (61%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMA 291
+++++++ LAGAIIGK G ++I E+GA + I + N +II + G+ +I +A
Sbjct: 114 STSKISVDASLAGAIIGKGGIHSKQICRETGAKLSIKDHERDPNLKIIELEGTFEQINVA 173
Query: 292 QYLLQQSV 299
++++ +
Sbjct: 174 SGMVRELI 181
>At4g18375.2 68417.m02727 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 606
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
++ P D+ G +IGK+G I IR + A I++ + L G + R+ITI
Sbjct: 39 RILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITI 85
Score = 39.5 bits (88), Expect = 0.003
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 232 TSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMA 291
++ ++ IP ++GK G + IR SGA IEI+ D I ++G+ +++ A
Sbjct: 536 SALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMRCA 595
Query: 292 QYLLQQSV 299
+ L+Q V
Sbjct: 596 ENLVQAFV 603
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGI-----EIAEP---LPGSNDRIITITGSPG 286
++ +P + ++IGKAG I++IR + A + ++++P D ++ I+G P
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 287 RIQMAQYLLQQSVHESNP 304
++ A + + +++ NP
Sbjct: 202 SVKQALFAVSAIMYKINP 219
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
++ Q+ + + G +IGK+GS I +IR + A I I++ G D ++ ++G ++
Sbjct: 393 ENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK---GKKDDLVEVSGEVSSVR 449
Query: 290 MA 291
A
Sbjct: 450 DA 451
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 246 IIGKAGSRIRKIRAESGAGIEIAEPLPGSNDR----IITITGSPGRIQM----AQYLLQQ 297
+IGK GS I++IR SG+ IE+ + D I+T T SP ++ A LLQ+
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQE 385
Query: 298 SVHESN 303
+++ +
Sbjct: 386 YINDED 391
>At4g18375.1 68417.m02726 KH domain-containing protein contains
similarity to RNA-binding KH-domains PF:00013
Length = 532
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITI 281
++ P D+ G +IGK+G I IR + A I++ + L G + R+ITI
Sbjct: 39 RILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQLHGCSQRVITI 85
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/78 (23%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 235 QVTIPKDLAGAIIGKAGSRIRKIRAESGAGI-----EIAEP---LPGSNDRIITITGSPG 286
++ +P + ++IGKAG I++IR + A + ++++P D ++ I+G P
Sbjct: 142 RLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDNVVVISGEPE 201
Query: 287 RIQMAQYLLQQSVHESNP 304
++ A + + +++ NP
Sbjct: 202 SVKQALFAVSAIMYKINP 219
Score = 34.3 bits (75), Expect = 0.11
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 230 QDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
++ Q+ + + G +IGK+GS I +IR + A I I++ G D ++ ++G ++
Sbjct: 393 ENVKMQLLVSSKVIGCVIGKSGSVINEIRKRTNANICISK---GKKDDLVEVSGEVSSVR 449
Query: 290 MA 291
A
Sbjct: 450 DA 451
Score = 31.9 bits (69), Expect = 0.57
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 8/66 (12%)
Query: 246 IIGKAGSRIRKIRAESGAGIEIAEPLPGSNDR----IITITGSPGRIQM----AQYLLQQ 297
+IGK GS I++IR SG+ IE+ + D I+T T SP ++ A LLQ+
Sbjct: 326 VIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQE 385
Query: 298 SVHESN 303
+++ +
Sbjct: 386 YINDED 391
>At4g26000.1 68417.m03745 KH domain-containing protein
single-stranded nucleic acid-binding protein CBP -
mouse, PIR2:S78515
Length = 495
Score = 38.7 bits (86), Expect = 0.005
Identities = 24/67 (35%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 233 STQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQMAQ 292
S + IP A IIG G+ I IR SGA I I E P + + I G+ ++Q A+
Sbjct: 342 SQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKES-PHPDQITVEIKGTTSQVQTAE 400
Query: 293 YLLQQSV 299
L+Q+ +
Sbjct: 401 QLIQEFI 407
Score = 35.5 bits (78), Expect = 0.046
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 231 DTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITG 283
D ++ +P GAIIG+ G I+K+ E+ A I++ + + DRI+ I+G
Sbjct: 73 DCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISG 125
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 32.3 bits (70), Expect = 0.43
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 231 DTST-QVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIAEPLPGSNDRIITITGSPGRIQ 289
D++T + ++ LAGAIIGK G ++I ++G + I + N + I + G+ +I
Sbjct: 112 DSATARFSVDASLAGAIIGKGGVSSKQICRQTGVKLSIQDHERDPNLKNIVLEGTLEQIS 171
Query: 290 MAQYLLQQSVHESN 303
A +++ + N
Sbjct: 172 EASAMVKDLIGRLN 185
>At4g35090.1 68417.m04984 catalase 2 identical to catalase 2
SP:P25819, GI:17865693 from [Arabidopsis thaliana]
Length = 492
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 29 SELIPPPTAPDGGSRTACVLDFDNSLK-TGARLKIFSNSAPQSSERIVQ 76
+E P P A G R C+++ +N+ K G R + F+ P+ ER +Q
Sbjct: 403 AEKYPTPPAVCSGKRERCIIEKENNFKEPGERYRTFT---PERQERFIQ 448
>At2g03110.1 68415.m00264 KH domain-containing protein
Length = 155
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 229 QQDTSTQVTIPKDLAGAIIGKAGSRIRKIRAESGAGIEIA-EPLPGSNDRIITI 281
Q + ++ +P D G +IGK G I+ +R ++ A I + + LP ++ TI
Sbjct: 70 QTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCTEKARTI 123
>At1g20620.1 68414.m02578 catalase 3 (SEN2) almost identical to
catalase 3 SP:Q42547, GI:3123188 from [Arabidopsis
thaliana]; identical to catalase 3 (SEN2) mRNA, partial
cds GI:3158369
Length = 492
Score = 28.3 bits (60), Expect = 7.0
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 29 SELIPPPTAPDGGSRTACVLDFDNSLK-TGARLKIFSNSAPQSSERIVQ 76
+E +P PT G RT CV+ +N+ K G R + + AP +R V+
Sbjct: 403 AEKVPTPTNSYTGIRTKCVIKKENNFKQAGDR---YRSWAPDRQDRFVK 448
>At1g15770.1 68414.m01892 expressed protein
Length = 332
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 4 VARYRVGALQVQEGGTAGRWCTFTASELIPPPTAPDG 40
V + R G LQ E GT G +AS L+P T+PDG
Sbjct: 180 VQQIRQGVLQSLEIGTPG----ISASPLLPELTSPDG 212
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.135 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,019,394
Number of Sequences: 28952
Number of extensions: 182544
Number of successful extensions: 370
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 292
Number of HSP's gapped (non-prelim): 75
length of query: 311
length of database: 12,070,560
effective HSP length: 81
effective length of query: 230
effective length of database: 9,725,448
effective search space: 2236853040
effective search space used: 2236853040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 59 (27.9 bits)
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