Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001953-TA|BGIBMGA001953-PA|IPR004088|KH, type 1,
IPR009019|KH, prokaryotic type
         (72 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    33   0.006
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    24   2.8  
SPBC1709.16c |||aromatic ring-opening dioxygenase |Schizosacchar...    23   3.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    22   8.6  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    22   8.6  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 32.7 bits (71), Expect = 0.006
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 42  QELDVRMLIHQSRAGCVIGKAGSKIKELR 70
           Q+L +R L+    AG +IGKAG  + ELR
Sbjct: 92  QQLTLRALLSTREAGIIIGKAGKNVAELR 120



 Score = 28.7 bits (61), Expect = 0.099
 Identities = 10/15 (66%), Positives = 13/15 (86%)

Query: 56  GCVIGKAGSKIKELR 70
           GC+IG+ GSKI E+R
Sbjct: 333 GCIIGRGGSKISEIR 347



 Score = 24.2 bits (50), Expect = 2.1
 Identities = 10/26 (38%), Positives = 18/26 (69%)

Query: 46  VRMLIHQSRAGCVIGKAGSKIKELRE 71
           +R+LI  S  G +IG+ G +IK +++
Sbjct: 181 LRLLIAHSLMGSIIGRNGLRIKLIQD 206


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 13  QKRHRQTDDEVTFLIPSKFHNQGGSR 38
           QK+  +TDDE TF+   + + QG ++
Sbjct: 123 QKQLNKTDDESTFIESHQIYIQGETK 148


>SPBC1709.16c |||aromatic ring-opening dioxygenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 285

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 25  FLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
           +L   KFH++G  R+ DQ +   +  +Q  A  V G  G
Sbjct: 98  YLYQIKFHSKGSKRIADQIISA-LKEYQIPAKTVSGDRG 135


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 4    DAYGDDGPAQKRHRQTDDEVTFLIPSKFH 32
            D +G+      R  Q+ D+    IPSKFH
Sbjct: 1167 DIFGNQNLDTDRPWQSLDKPGAFIPSKFH 1195


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 3   RDAYGDDGPAQKRHRQTDDEVTFLIPSKFHNQGGSRMGDQELD 45
           + + G  GP   +   + D ++F  PS++ +   S   DQ +D
Sbjct: 396 KQSSGKLGPLPPQSFNSSDYISFDEPSRYLSDDASLWPDQYVD 438


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 330,822
Number of Sequences: 5004
Number of extensions: 10805
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 7
length of query: 72
length of database: 2,362,478
effective HSP length: 52
effective length of query: 20
effective length of database: 2,102,270
effective search space: 42045400
effective search space used: 42045400
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)