Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001953-TA|BGIBMGA001953-PA|IPR004088|KH, type 1,
IPR009019|KH, prokaryotic type
(72 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulate... 42 3e-04
S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear rib... 42 3e-04
CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein. 42 3e-04
BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear r... 42 3e-04
BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear r... 42 3e-04
AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear r... 42 3e-04
AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear ... 42 3e-04
AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear ... 42 3e-04
AL354733-10|CAI16019.1| 428|Homo sapiens heterogeneous nuclear ... 42 3e-04
AL354733-9|CAI16020.1| 463|Homo sapiens heterogeneous nuclear r... 42 3e-04
AL354733-8|CAI16018.1| 306|Homo sapiens heterogeneous nuclear r... 42 3e-04
AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear r... 42 3e-04
AF257772-1|AAG02186.1| 424|Homo sapiens RNA binding protein MCG... 38 0.005
AF257770-1|AAG02184.1| 424|Homo sapiens RNA binding protein MCG... 38 0.005
BC017098-1|AAH17098.1| 360|Homo sapiens PCBP4 protein protein. 37 0.012
BC004153-1|AAH04153.1| 403|Homo sapiens poly(rC) binding protei... 37 0.012
BC003008-1|AAH03008.1| 403|Homo sapiens poly(rC) binding protei... 37 0.012
AK023993-1|BAB14761.1| 403|Homo sapiens protein ( Homo sapiens ... 37 0.012
AF257771-1|AAG02185.1| 369|Homo sapiens RNA binding protein MCG... 37 0.012
AF176330-1|AAG09241.1| 403|Homo sapiens alphaCP-4 protein. 37 0.012
AF092441-1|AAP97216.1| 397|Homo sapiens CBP protein. 35 0.035
BC012061-1|AAH12061.1| 313|Homo sapiens PCBP3 protein protein. 35 0.047
AY780793-1|AAV98363.1| 361|Homo sapiens poly(rC) binding protei... 35 0.047
AK094301-1|BAC04327.1| 351|Homo sapiens protein ( Homo sapiens ... 35 0.047
AF176329-1|AAG09240.1| 339|Homo sapiens alphaCP-3 protein. 35 0.047
X78136-1|CAA55015.1| 365|Homo sapiens hnRNP-E2 protein. 33 0.11
BC107688-1|AAI07689.1| 335|Homo sapiens PCBP2 protein protein. 33 0.11
BC071942-1|AAH71942.1| 366|Homo sapiens poly(rC) binding protei... 33 0.11
BC001155-1|AAH01155.1| 362|Homo sapiens poly(rC) binding protei... 33 0.11
AF141340-1|AAG49443.1| 276|Homo sapiens LYST-interacting protei... 33 0.11
AB208825-1|BAD92062.1| 373|Homo sapiens poly(rC)-binding protei... 33 0.11
AB188306-1|BAD36897.1| 331|Homo sapiens poly(rC) binding protei... 33 0.11
Z29505-1|CAA82631.1| 299|Homo sapiens sub2.3 protein. 33 0.14
X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein. 33 0.14
U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein. 33 0.14
BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protei... 33 0.14
AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein. 33 0.14
U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein. 33 0.19
U69126-1|AAC50892.1| 652|Homo sapiens FUSE binding protein 2 pr... 33 0.19
BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein. 33 0.19
AB209662-1|BAD92899.1| 384|Homo sapiens KH-type splicing regula... 33 0.19
U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein prot... 31 0.43
BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein. 31 0.43
BC010083-1|AAH10083.1| 304|Homo sapiens FUBP1 protein protein. 31 0.43
AB209366-1|BAD92603.1| 493|Homo sapiens far upstream element-bi... 31 0.43
BC067878-1|AAH67878.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 31 0.57
BC051703-1|AAH51703.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 31 0.57
AY039237-1|AAK72102.1| 630|Homo sapiens DEAD-box protein CAGE p... 31 0.57
U69127-1|AAC50893.1| 600|Homo sapiens FUSE binding protein 3 pr... 31 0.76
BC007874-1|AAH07874.1| 261|Homo sapiens FUBP3 protein protein. 31 0.76
AL359092-4|CAM45745.1| 261|Homo sapiens far upstream element (F... 31 0.76
AL359092-2|CAM45743.1| 572|Homo sapiens far upstream element (F... 31 0.76
AL353695-2|CAH70961.1| 261|Homo sapiens far upstream element (F... 31 0.76
AL353695-1|CAH70960.1| 572|Homo sapiens far upstream element (F... 31 0.76
AL589765-15|CAI17177.1| 561|Homo sapiens tudor and KH domain co... 30 1.0
AL589765-13|CAI17175.1| 516|Homo sapiens tudor and KH domain co... 30 1.0
AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH domain-con... 30 1.0
AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding pr... 30 1.0
DQ227344-1|ABB46294.1| 438|Homo sapiens IGF2 mRNA-binding prote... 29 2.3
U70477-1|AAB88661.1| 498|Homo sapiens astrocytic NOVA-like RNA-... 28 5.3
AF083898-1|AAC72355.1| 492|Homo sapiens RNA-binding protein Nov... 28 5.3
AC006540-1|AAD13116.1| 464|Homo sapiens RNA-binding protein Nov... 28 5.3
U04840-1|AAA16022.1| 510|Homo sapiens onconeural ventral antige... 27 7.1
BC075039-1|AAH75039.1| 507|Homo sapiens neuro-oncological ventr... 27 7.1
BC075038-1|AAH75038.1| 507|Homo sapiens neuro-oncological ventr... 27 7.1
BC066938-1|AAH66938.1| 648|Homo sapiens DEAD (Asp-Glu-Ala-Asp) ... 27 7.1
AJ278110-1|CAB92442.1| 648|Homo sapiens DEAD-box protein protein. 27 7.1
>X72727-1|CAA51267.1| 464|Homo sapiens transformation upregulated
nuclear protein protein.
Length = 464
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>S74678-1|AAB20770.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein complex K protein.
Length = 463
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>CR456771-1|CAG33052.1| 464|Homo sapiens HNRPK protein.
Length = 464
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>BC014980-1|AAH14980.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>BC000355-1|AAH00355.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>AY911506-1|AAW84289.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K transcript variant protein.
Length = 464
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>AL354733-12|CAI16022.1| 379|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 379
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 118 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 148
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
>AL354733-11|CAI16021.1| 464|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 464
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>AL354733-10|CAI16019.1| 428|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 428
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 107 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 137
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 348 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 379
>AL354733-9|CAI16020.1| 463|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 463
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 142 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 172
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 36 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 69
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 383 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 414
>AL354733-8|CAI16018.1| 306|Homo sapiens heterogeneous nuclear
ribonucleoprotein K protein.
Length = 306
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 73 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 103
>AB209562-1|BAD92799.1| 442|Homo sapiens heterogeneous nuclear
ribonucleoprotein K isoform a variant protein.
Length = 442
Score = 41.9 bits (94), Expect = 3e-04
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D + ++R+LIHQS AG +IG G+KIKELRE
Sbjct: 120 DFDCELRLLIHQSLAGGIIGVKGAKIKELRE 150
Score = 35.9 bits (79), Expect = 0.020
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 37 SRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
SR D+ +++R+L+ AG VIGK G IK LR
Sbjct: 38 SRNTDEMVELRILLQSKNAGAVIGKGGKNIKALR 71
Score = 27.9 bits (59), Expect = 5.3
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
+G + ++ I + AG +IGK G +IK++R
Sbjct: 361 LGGPIITTQVTIPKDLAGSIIGKGGQRIKQIR 392
>AF257772-1|AAG02186.1| 424|Homo sapiens RNA binding protein
MCG10 protein.
Length = 424
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREI 72
G + + +R++I S+ G +IGKAG+KIKE+RE+
Sbjct: 60 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREV 96
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 226 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 282
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 283 SKISEIRQM 291
>AF257770-1|AAG02184.1| 424|Homo sapiens RNA binding protein
MCG10 protein.
Length = 424
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELREI 72
G + + +R++I S+ G +IGKAG+KIKE+RE+
Sbjct: 60 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIREV 96
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 226 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 282
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 283 SKISEIRQM 291
>BC017098-1|AAH17098.1| 360|Homo sapiens PCBP4 protein protein.
Length = 360
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
G + + +R++I S+ G +IGKAG+KIKE+RE
Sbjct: 94 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 162 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 218
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 219 SKISEIRQM 227
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +RML+H G +IGK G +K +RE
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIRE 45
>BC004153-1|AAH04153.1| 403|Homo sapiens poly(rC) binding protein 4
protein.
Length = 403
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
G + + +R++I S+ G +IGKAG+KIKE+RE
Sbjct: 94 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 205 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 261
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 262 SKISEIRQM 270
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +RML+H G +IGK G +K +RE
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIRE 45
>BC003008-1|AAH03008.1| 403|Homo sapiens poly(rC) binding protein 4
protein.
Length = 403
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
G + + +R++I S+ G +IGKAG+KIKE+RE
Sbjct: 94 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 205 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 261
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 262 SKISEIRQM 270
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +RML+H G +IGK G +K +RE
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIRE 45
>AK023993-1|BAB14761.1| 403|Homo sapiens protein ( Homo sapiens
cDNA FLJ13931 fis, clone Y79AA1000752, moderately
similar to PUTATIVE HETEROGENEOUS NUCLEAR
RIBONUCLEOPROTEIN X. ).
Length = 403
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
G + + +R++I S+ G +IGKAG+KIKE+RE
Sbjct: 94 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 205 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 261
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 262 SKISEIRQM 270
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +RML+H G +IGK G +K +RE
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIRE 45
>AF257771-1|AAG02185.1| 369|Homo sapiens RNA binding protein
MCG10 protein.
Length = 369
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
G + + +R++I S+ G +IGKAG+KIKE+RE
Sbjct: 60 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 95
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 171 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 227
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 228 SKISEIRQM 236
>AF176330-1|AAG09241.1| 403|Homo sapiens alphaCP-4 protein.
Length = 403
Score = 36.7 bits (81), Expect = 0.012
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
G + + +R++I S+ G +IGKAG+KIKE+RE
Sbjct: 94 GGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRE 129
Score = 34.7 bits (76), Expect = 0.047
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 6 YGDDGPAQ--KRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAG 63
YG PA+ K + + V F PS G G Q L+ GCVIG+ G
Sbjct: 205 YGAVTPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQG 261
Query: 64 SKIKELREI 72
SKI E+R++
Sbjct: 262 SKISEIRQM 270
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +RML+H G +IGK G +K +RE
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIRE 45
>AF092441-1|AAP97216.1| 397|Homo sapiens CBP protein.
Length = 397
Score = 35.1 bits (77), Expect = 0.035
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 36 GSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
G + + +R++I S+ G +IG+AG+KIKE+RE
Sbjct: 94 GGNVSRPPVTLRLVIPASQCGSLIGQAGTKIKEIRE 129
Score = 33.1 bits (72), Expect = 0.14
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +RML+H G +IGK G +K +RE
Sbjct: 18 LTLRMLMHGKEVGSIIGKKGETVKRIRE 45
Score = 32.7 bits (71), Expect = 0.19
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 40 GDQELDVRMLIHQSRAGCVIGKAGSKIKELREI 72
G Q L+ GCVIG+ GSKI E+R++
Sbjct: 238 GTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQM 270
>BC012061-1|AAH12061.1| 313|Homo sapiens PCBP3 protein protein.
Length = 313
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK GSKIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRE 125
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMRE 41
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 248 GCIIGRQGTKINEIRQM 264
>AY780793-1|AAV98363.1| 361|Homo sapiens poly(rC) binding protein 3
protein.
Length = 361
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK GSKIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRE 125
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMRE 41
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 296 GCIIGRQGTKINEIRQM 312
>AK094301-1|BAC04327.1| 351|Homo sapiens protein ( Homo sapiens
cDNA FLJ36982 fis, clone BRACE2006488, highly similar to
POLY(RC) BINDING PROTEIN 2. ).
Length = 351
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK GSKIKE+RE
Sbjct: 132 LRLVVPASQCGSLIGKGGSKIKEIRE 157
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 46 LTIRLLMHGKEVGSIIGKKGETVKKMRE 73
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 286 GCIIGRQGTKINEIRQM 302
>AF176329-1|AAG09240.1| 339|Homo sapiens alphaCP-3 protein.
Length = 339
Score = 34.7 bits (76), Expect = 0.047
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK GSKIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGSKIKEIRE 125
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGETVKKMRE 41
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 274 GCIIGRQGTKINEIRQM 290
>X78136-1|CAA55015.1| 365|Homo sapiens hnRNP-E2 protein.
Length = 365
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMRE 41
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGCKIKEIRE 125
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 300 GCIIGRQGAKINEIRQM 316
>BC107688-1|AAI07689.1| 335|Homo sapiens PCBP2 protein protein.
Length = 335
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMRE 41
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGCKIKEIRE 125
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 270 GCIIGRQGAKINEIRQM 286
>BC071942-1|AAH71942.1| 366|Homo sapiens poly(rC) binding protein
2 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMRE 41
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGCKIKEIRE 125
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 301 GCIIGRQGAKINEIRQM 317
>BC001155-1|AAH01155.1| 362|Homo sapiens poly(rC) binding protein
2 protein.
Length = 362
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMRE 41
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGCKIKEIRE 125
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 297 GCIIGRQGAKINEIRQM 313
>AF141340-1|AAG49443.1| 276|Homo sapiens LYST-interacting protein
LIP4 protein.
Length = 276
Score = 33.5 bits (73), Expect = 0.11
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 8 DDGPAQKRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIK 67
D K + + V F PS G G Q L+ GCVIG+ GSKI
Sbjct: 52 DPAEVTKLQQLSSHAVPFATPSVVP---GLDPGTQTSSQEFLVPNDLIGCVIGRQGSKIS 108
Query: 68 ELREI 72
E+R++
Sbjct: 109 EIRQM 113
>AB208825-1|BAD92062.1| 373|Homo sapiens poly(rC)-binding protein
2 isoform b variant protein.
Length = 373
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 26 LTIRLLMHGKEVGSIIGKKGESVKKMRE 53
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK G KIKE+RE
Sbjct: 112 LRLVVPASQCGSLIGKGGCKIKEIRE 137
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 308 GCIIGRQGAKINEIRQM 324
>AB188306-1|BAD36897.1| 331|Homo sapiens poly(rC) binding protein
2 protein.
Length = 331
Score = 33.5 bits (73), Expect = 0.11
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K++RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKKMRE 41
Score = 32.7 bits (71), Expect = 0.19
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ S+ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPASQCGSLIGKGGCKIKEIRE 125
Score = 28.3 bits (60), Expect = 4.0
Identities = 9/17 (52%), Positives = 15/17 (88%)
Query: 56 GCVIGKAGSKIKELREI 72
GC+IG+ G+KI E+R++
Sbjct: 266 GCIIGRQGAKINEIRQM 282
>Z29505-1|CAA82631.1| 299|Homo sapiens sub2.3 protein.
Length = 299
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K +RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRE 41
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ ++ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPATQCGSLIGKGGCKIKEIRE 125
>X78137-1|CAA55016.1| 356|Homo sapiens hnRNP-E1 protein.
Length = 356
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K +RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRE 41
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ ++ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPATQCGSLIGKGGCKIKEIRE 125
>U24223-1|AAA91317.1| 356|Homo sapiens alpha-CP1 protein.
Length = 356
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K +RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRE 41
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ ++ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPATQCGSLIGKGGCKIKEIRE 125
>BC039742-1|AAH39742.1| 356|Homo sapiens poly(rC) binding protein
1 protein.
Length = 356
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K +RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRE 41
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ ++ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPATQCGSLIGKGGCKIKEIRE 125
>AC016700-1|AAX93191.1| 356|Homo sapiens unknown protein.
Length = 356
Score = 33.1 bits (72), Expect = 0.14
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 44 LDVRMLIHQSRAGCVIGKAGSKIKELRE 71
L +R+L+H G +IGK G +K +RE
Sbjct: 14 LTIRLLMHGKEVGSIIGKKGESVKRIRE 41
Score = 31.5 bits (68), Expect = 0.43
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
+R+++ ++ G +IGK G KIKE+RE
Sbjct: 100 LRLVVPATQCGSLIGKGGCKIKEIRE 125
>U94832-1|AAB53222.1| 711|Homo sapiens KSRP protein.
Length = 711
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 28 PSKFH-NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
P +FH N G + G + ++I +AG VIGK G IK+L+E
Sbjct: 220 PGQFHDNANGGQNGTVQ---EIMIPAGKAGLVIGKGGETIKQLQE 261
>U69126-1|AAC50892.1| 652|Homo sapiens FUSE binding protein 2
protein.
Length = 652
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 28 PSKFH-NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
P +FH N G + G + ++I +AG VIGK G IK+L+E
Sbjct: 164 PGQFHDNANGGQNGTVQ---EIMIPAGKAGLVIGKGGETIKQLQE 205
>BC085004-1|AAH85004.1| 710|Homo sapiens KHSRP protein protein.
Length = 710
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 28 PSKFH-NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
P +FH N G + G + ++I +AG VIGK G IK+L+E
Sbjct: 220 PGQFHDNANGGQNGTVQ---EIMIPAGKAGLVIGKGGETIKQLQE 261
>AB209662-1|BAD92899.1| 384|Homo sapiens KH-type splicing
regulatory protein (FUSE binding protein 2) variant
protein.
Length = 384
Score = 32.7 bits (71), Expect = 0.19
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 28 PSKFH-NQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
P +FH N G + G + ++I +AG VIGK G IK+L+E
Sbjct: 38 PGQFHDNANGGQNGTVQ---EIMIPAGKAGLVIGKGGETIKQLQE 79
>U05040-1|AAA17976.2| 644|Homo sapiens FUSE binding protein
protein.
Length = 644
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FH+ G QE+ +I S+AG VIGK G IK+L+E
Sbjct: 177 FHHGDGPGNAVQEI----MIPASKAGLVIGKGGETIKQLQE 213
>BC017247-1|AAH17247.1| 653|Homo sapiens FUBP1 protein protein.
Length = 653
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FH+ G QE+ +I S+AG VIGK G IK+L+E
Sbjct: 176 FHHGDGPGNAVQEI----MIPASKAGLVIGKGGETIKQLQE 212
>BC010083-1|AAH10083.1| 304|Homo sapiens FUBP1 protein protein.
Length = 304
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FH+ G QE+ +I S+AG VIGK G IK+L+E
Sbjct: 177 FHHGDGPGNAVQEI----MIPASKAGLVIGKGGETIKQLQE 213
>AB209366-1|BAD92603.1| 493|Homo sapiens far upstream
element-binding protein variant protein.
Length = 493
Score = 31.5 bits (68), Expect = 0.43
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FH+ G QE+ +I S+AG VIGK G IK+L+E
Sbjct: 27 FHHGDGPGNAVQEI----MIPASKAGLVIGKGGETIKQLQE 63
>BC067878-1|AAH67878.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp)
box polypeptide 53 protein.
Length = 631
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
F +QG G +E + I + G VIG +GSKIK+L+
Sbjct: 36 FGHQGPRAAGSREPPLCFKIKNNMVGVVIGYSGSKIKDLQ 75
>BC051703-1|AAH51703.1| 631|Homo sapiens DEAD (Asp-Glu-Ala-Asp)
box polypeptide 53 protein.
Length = 631
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
F +QG G +E + I + G VIG +GSKIK+L+
Sbjct: 36 FGHQGPRAAGSREPPLCFKIKNNMVGVVIGYSGSKIKDLQ 75
>AY039237-1|AAK72102.1| 630|Homo sapiens DEAD-box protein CAGE
protein.
Length = 630
Score = 31.1 bits (67), Expect = 0.57
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
F +QG G +E + I + G VIG +GSKIK+L+
Sbjct: 36 FGHQGPRAAGSREPPLCFKIKNNMVGVVIGYSGSKIKDLQ 75
>U69127-1|AAC50893.1| 600|Homo sapiens FUSE binding protein 3
protein.
Length = 600
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FHN S QE+ LI S+ G VIG+ G IK+L+E
Sbjct: 182 FHNDIDSNSTIQEI----LIPASKVGLVIGRGGETIKQLQE 218
>BC007874-1|AAH07874.1| 261|Homo sapiens FUBP3 protein protein.
Length = 261
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FHN S QE+ LI S+ G VIG+ G IK+L+E
Sbjct: 94 FHNDIDSNSTIQEI----LIPASKVGLVIGRGGETIKQLQE 130
>AL359092-4|CAM45745.1| 261|Homo sapiens far upstream element
(FUSE) binding protein 3 protein.
Length = 261
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FHN S QE+ LI S+ G VIG+ G IK+L+E
Sbjct: 94 FHNDIDSNSTIQEI----LIPASKVGLVIGRGGETIKQLQE 130
>AL359092-2|CAM45743.1| 572|Homo sapiens far upstream element
(FUSE) binding protein 3 protein.
Length = 572
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FHN S QE+ LI S+ G VIG+ G IK+L+E
Sbjct: 154 FHNDIDSNSTIQEI----LIPASKVGLVIGRGGETIKQLQE 190
>AL353695-2|CAH70961.1| 261|Homo sapiens far upstream element
(FUSE) binding protein 3 protein.
Length = 261
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FHN S QE+ LI S+ G VIG+ G IK+L+E
Sbjct: 94 FHNDIDSNSTIQEI----LIPASKVGLVIGRGGETIKQLQE 130
>AL353695-1|CAH70960.1| 572|Homo sapiens far upstream element
(FUSE) binding protein 3 protein.
Length = 572
Score = 30.7 bits (66), Expect = 0.76
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 31 FHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
FHN S QE+ LI S+ G VIG+ G IK+L+E
Sbjct: 154 FHNDIDSNSTIQEI----LIPASKVGLVIGRGGETIKQLQE 190
>AL589765-15|CAI17177.1| 561|Homo sapiens tudor and KH domain
containing protein.
Length = 561
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
+G+ ++++ M + Q +IG+ G+ IK+LR+
Sbjct: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRK 80
>AL589765-13|CAI17175.1| 516|Homo sapiens tudor and KH domain
containing protein.
Length = 516
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
+G+ ++++ M + Q +IG+ G+ IK+LR+
Sbjct: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRK 80
>AF227192-1|AAF36701.1| 561|Homo sapiens tudor and KH
domain-containing protein protein.
Length = 561
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
+G+ ++++ M + Q +IG+ G+ IK+LR+
Sbjct: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRK 80
>AF119121-1|AAD30971.1| 606|Homo sapiens putative RNA binding
protein protein.
Length = 606
Score = 30.3 bits (65), Expect = 1.0
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 39 MGDQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
+G+ ++++ M + Q +IG+ G+ IK+LR+
Sbjct: 48 VGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRK 80
>DQ227344-1|ABB46294.1| 438|Homo sapiens IGF2 mRNA-binding protein
1 isoform protein.
Length = 438
Score = 29.1 bits (62), Expect = 2.3
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 10 GPAQKRHRQTDDEVTFLIPSKFHNQGGSRMGDQELDVRMLIHQSRAGCVIGKAGSKIKEL 69
G + + + T ++ + N+ +R D E+ +++L H + G +IGK G +K++
Sbjct: 105 GTVENCEQVNTESETAVVNVTYSNREQTRQAD-EVPLKILAHNNFVGRLIGKEGRNLKKV 163
Query: 70 RE 71
+
Sbjct: 164 EQ 165
>U70477-1|AAB88661.1| 498|Homo sapiens astrocytic NOVA-like
RNA-binding protein protein.
Length = 498
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D+ ++++ S AG +IGK G+ +K + E
Sbjct: 134 DRAKQAKLIVPNSTAGLIIGKGGATVKAVME 164
>AF083898-1|AAC72355.1| 492|Homo sapiens RNA-binding protein Nova-2
protein.
Length = 492
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D+ ++++ S AG +IGK G+ +K + E
Sbjct: 128 DRAKQAKLIVPNSTAGLIIGKGGATVKAVME 158
>AC006540-1|AAD13116.1| 464|Homo sapiens RNA-binding protein Nova-2
[AA 29-492] protein.
Length = 464
Score = 27.9 bits (59), Expect = 5.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 41 DQELDVRMLIHQSRAGCVIGKAGSKIKELRE 71
D+ ++++ S AG +IGK G+ +K + E
Sbjct: 100 DRAKQAKLIVPNSTAGLIIGKGGATVKAVME 130
>U04840-1|AAA16022.1| 510|Homo sapiens onconeural ventral antigen-1
protein.
Length = 510
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
V++++ S AG +IGK G+ +K + E
Sbjct: 177 VKIIVPNSTAGLIIGKGGATVKAVME 202
>BC075039-1|AAH75039.1| 507|Homo sapiens neuro-oncological ventral
antigen 1 protein.
Length = 507
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
V++++ S AG +IGK G+ +K + E
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAVME 199
>BC075038-1|AAH75038.1| 507|Homo sapiens neuro-oncological ventral
antigen 1 protein.
Length = 507
Score = 27.5 bits (58), Expect = 7.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 46 VRMLIHQSRAGCVIGKAGSKIKELRE 71
V++++ S AG +IGK G+ +K + E
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAVME 199
>BC066938-1|AAH66938.1| 648|Homo sapiens DEAD (Asp-Glu-Ala-Asp)
box polypeptide 43 protein.
Length = 648
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 40 GDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
G +EL + + G VIG+ GSKIK ++
Sbjct: 64 GHEELPLCFALKSHFVGAVIGRGGSKIKNIQ 94
>AJ278110-1|CAB92442.1| 648|Homo sapiens DEAD-box protein
protein.
Length = 648
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 40 GDQELDVRMLIHQSRAGCVIGKAGSKIKELR 70
G +EL + + G VIG+ GSKIK ++
Sbjct: 64 GHEELPLCFALKSHFVGAVIGRGGSKIKNIQ 94
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.318 0.137 0.397
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,657,971
Number of Sequences: 224733
Number of extensions: 365003
Number of successful extensions: 653
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 151
length of query: 72
length of database: 73,234,838
effective HSP length: 51
effective length of query: 21
effective length of database: 61,773,455
effective search space: 1297242555
effective search space used: 1297242555
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
- SilkBase 1999-2023 -