GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001953-TA|BGIBMGA001953-PA|IPR004088|KH, type 1,
IPR009019|KH, prokaryotic type
         (72 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     19   6.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    19   6.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           19   6.8  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 7   GDDGPAQKRHRQTDDE 22
           GDDG     +   DD+
Sbjct: 186 GDDGQGSSTNNDEDDD 201


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 7   GDDGPAQKRHRQTDDE 22
           GDDG     +   DD+
Sbjct: 186 GDDGQGSSTNNDEDDD 201


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 18.6 bits (36), Expect = 6.8
 Identities = 6/16 (37%), Positives = 8/16 (50%)

Query: 7   GDDGPAQKRHRQTDDE 22
           GDDG     +   DD+
Sbjct: 186 GDDGQGSSTNNDEDDD 201


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.137    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,573
Number of Sequences: 317
Number of extensions: 599
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 72
length of database: 114,650
effective HSP length: 45
effective length of query: 27
effective length of database: 100,385
effective search space:  2710395
effective search space used:  2710395
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
S2: 35 (18.2 bits)